RNA–Protein interactions for RNA: ENST00000576149.5

VPS53-220, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 2,444 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-220ENST00000576149 PMP22Q01453 160 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 NHLH2Q02577 135 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 HABP2Q14520 560 aaPredicted RBP8.58□□□□□ -1.04
VPS53-220ENST00000576149 MYPOPQ86VE0 399 aaPredicted RBP8.58□□□□□ -1.04
VPS53-220ENST00000576149 FAM169BQ8N8A8 192 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CLRN3Q8NCR9 226 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 RDH5Q92781 318 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 BOD1Q96IK1 185 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 SPIN2AQ99865 258 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 SPIN2BQ9BPZ2 258 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 DLL3Q9NYJ7 618 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 ARID1AO14497 2285 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CELSR3Q9NYQ7 3312 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 DUXBA0A1W2PPF3 345 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CLEC18AA5D8T8 446 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 C3orf80F5H4A9 247 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 HSD17B6O14756 317 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CELA3BP08861 270 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 DANCRP0C864 163 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 SPP1P10451 314 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CD82P27701 267 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 NKX2-1P43699 371 aaPredicted RBP8.58□□□□□ -1.04
VPS53-220ENST00000576149 ID4P47928 161 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 IGFBP7Q16270 282 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 SWI5Q1ZZU3 235 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 FAM76BQ5HYJ3 339 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 ZNF324BQ6AW86 544 aaPredicted RBP8.58□□□□□ -1.04
VPS53-220ENST00000576149 P4HA3Q7Z4N8 544 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CMTM1Q8IZ96 169 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 CLEC18CQ8NCF0 446 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 TMEM68Q96MH6 324 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 GPHA2Q96T91 129 aa8.58□□□□□ -1.04
VPS53-220ENST00000576149 ADAT1Q9BUB4 502 aaKnown RBP8.58□□□□□ -1.04
VPS53-220ENST00000576149 CDRT15L2A8MXV6 281 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 DEGS1O15121 323 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 SNAPINO95295 136 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 IGHV1-2P23083 117 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 HLA-DRB3P79483 266 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 EWSR1Q01844 656 aaKnown RBP eCLIP8.57□□□□□ -1.04
VPS53-220ENST00000576149 MRPL49Q13405 166 aaKnown RBP8.57□□□□□ -1.04
VPS53-220ENST00000576149 NMSQ5H8A3 153 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 Q6P435 159 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 PIP4P1Q86T03 277 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 WDR86Q86TI4 376 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 OR2C3Q8N628 320 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 ABHD14BQ96IU4 210 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 CABLES2Q9BTV7 478 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 RTL8AQ9BWD3 113 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 CLCF1Q9UBD9 225 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 OR2W1Q9Y3N9 320 aa8.57□□□□□ -1.04
VPS53-220ENST00000576149 LRP5LA4QPB2 252 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 A6NLC8 198 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 H0Y980 276 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 AGPAT2O15120 278 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 NKX2-8O15522 239 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 ADAM20O43506 726 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 PGLYRP1O75594 196 aaPredicted RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 IGHG3P01860 377 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 OR8U9P0C7N5 309 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 ZNF44P15621 663 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 VDAC1P21796 283 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 DVL1P1P54792 670 aaPredicted RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 UBE2NP61088 152 aaKnown RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 PPP1CBP62140 327 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 TGFBR3Q03167 851 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 H1FOOQ8IZA3 346 aaPredicted RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 SUMF1Q8NBK3 374 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 OR5D13Q8NGL4 314 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 OR8U1Q8NH10 309 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 OR10J5Q8NHC4 309 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 IL22RA2Q969J5 263 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 OR2J1Q9GZK6 312 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 A0A1W2PR80 420 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 FAM157AC9JC47 383 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 F12P00748 615 aaPredicted RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 H2AFB1P0C5Y9 115 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 SFTA3P0C7M3 94 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 PVALBP20472 110 aaPredicted RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 CD80P33681 288 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 ERVK11-1P61568 191 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 DHRS7BQ6IAN0 325 aaPredicted RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 FAM122CQ6P4D5 195 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 TMEM88Q6PEY1 159 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 PRR18Q8N4B5 295 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 FAM216AQ8WUB2 273 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 KIRREL1Q96J84 757 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 PARP12Q9H0J9 701 aaKnown RBP8.56□□□□□ -1.04
VPS53-220ENST00000576149 CDH20Q9HBT6 801 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 TREM2Q9NZC2 230 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 PCNX2A6NKB5 2137 aa8.56□□□□□ -1.04
VPS53-220ENST00000576149 FAM24AA6NFZ4 105 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 C9JQL5 133 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 NPIPB11E5RHQ5 1161 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 F2RP25116 425 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 MDH2P40926 338 aaKnown RBP8.55□□□□□ -1.04
VPS53-220ENST00000576149 RAB5CP51148 216 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 IDH3GP51553 393 aaPredicted RBP8.55□□□□□ -1.04
VPS53-220ENST00000576149 UCP2P55851 309 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 ID3Q02535 119 aa8.55□□□□□ -1.04
VPS53-220ENST00000576149 GABRA6Q16445 453 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms