RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 KCNK7Q9Y2U2 307 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 TBL2Q9Y4P3 447 aaKnown RBP5.4□□□□□ -1.54
VPS53-213ENST00000572334 R4GMQ9 66 aa5.4□□□□□ -1.54
VPS53-213ENST00000572334 DHRS7CA6NNS2 312 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 MPTX1A8MV57 137 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 FAM90A22PA8MWA6 464 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 INMT-MINDY4F8WBC2 141 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 H3BSH0 61 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 PSPNO60542 156 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 PRAF2O60831 178 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TSC22D2O75157 780 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 FBXO24O75426 580 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 MMP23AO75900 390 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 IGHA1P01876 353 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 RBP4P02753 201 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 ARG1P05089 322 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 ZNF728P0DKX0 622 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 GADD45AP24522 165 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 VEGFCP49767 419 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 DYNLT3P51808 116 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 CDC42P60953 191 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 CNN3Q15417 329 aaKnown RBP5.39□□□□□ -1.55
VPS53-213ENST00000572334 FAM189A2Q15884 450 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 SSX2Q16385 188 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 PYDC2Q56P42 97 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TCTEX1D4Q5JR98 221 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 RNLSQ5VYX0 342 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 NXNL2Q5VZ03 156 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 KDM4DQ6B0I6 523 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 LIN54Q6MZP7 749 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TMEM65Q6PI78 240 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 AHSA2Q719I0 299 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 RNF144BQ7Z419 303 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 HSD17B13Q7Z5P4 300 aaPredicted RBP5.39□□□□□ -1.55
VPS53-213ENST00000572334 LHFPL3Q86UP9 236 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 COMMD2Q86X83 199 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 CATSPERDQ86XM0 798 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 SPAG16Q8N0X2 631 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 PRSS35Q8N3Z0 413 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TPRX1Q8N7U7 411 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TCEANCQ8N8B7 351 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 WFDC9Q8NEX5 89 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TRMT10AQ8TBZ6 339 aaKnown RBP5.39□□□□□ -1.55
VPS53-213ENST00000572334 MALSU1Q96EH3 234 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 DIRAS2Q96HU8 199 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 HRASLS5Q96KN8 279 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 C12orf57Q99622 126 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 NKX3-1Q99801 234 aaPredicted RBP5.39□□□□□ -1.55
VPS53-213ENST00000572334 PKIBQ9C010 78 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 NPFFR1Q9GZQ6 430 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 MOB1AQ9H8S9 216 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 ISYNA1Q9NPH2 558 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 AURKAIP1Q9NWT8 199 aaPredicted RBP5.39□□□□□ -1.55
VPS53-213ENST00000572334 SCP2D1Q9UJQ7 156 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 IKZF2Q9UKS7 526 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TBC1D24Q9ULP9 559 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 POLDIP2Q9Y2S7 368 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 ZNF281Q9Y2X9 895 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 TMEM14AQ9Y6G1 99 aa5.39□□□□□ -1.55
VPS53-213ENST00000572334 IGKV1-9A0A0C4DH69 117 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 A0A1W2PPH5 198 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 A0A1W2PQL4 384 aaPredicted RBP5.38□□□□□ -1.55
VPS53-213ENST00000572334 NUDT19A8MXV4 375 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 ZNF670-ZNF695F2Z2N8 137 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 LYRM1O43325 122 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 SC5DO75845 299 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 RPP14O95059 124 aaKnown RBP5.38□□□□□ -1.55
VPS53-213ENST00000572334 AMY1AP04745 511 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 AMY2AP04746 511 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 CHRM2P08172 466 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 ARSBP15848 533 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 MAPK3P27361 379 aaPredicted RBP5.38□□□□□ -1.55
VPS53-213ENST00000572334 GDNFP39905 211 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 KIR3DL2P43630 455 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 NPBWR2P48146 333 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 LGALS4P56470 323 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 PITPNAQ00169 270 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 ZNF91Q05481 1191 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 ODF4Q2M2E3 257 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 CDNFQ49AH0 187 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 LBHQ53QV2 105 aaPredicted RBP5.38□□□□□ -1.55
VPS53-213ENST00000572334 UTF1Q5T230 341 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 BCL2L15Q5TBC7 163 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 UQCC3Q6UW78 93 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 NDUFA11Q86Y39 141 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 SNX29P2Q8IUI4 249 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 C9orf62Q8N4C0 152 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 OR4S1Q8NGB4 309 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 OR4P4Q8NGL7 312 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 RNASE11Q8TAA1 199 aaKnown RBP5.38□□□□□ -1.55
VPS53-213ENST00000572334 TMEM163Q8TC26 289 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 RPS4Y2Q8TD47 263 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 SLAMF9Q96A28 289 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 SNX22Q96L94 193 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 FYTTD1Q96QD9 318 aaKnown RBP5.38□□□□□ -1.55
VPS53-213ENST00000572334 ZNF251Q9BRH9 671 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 CHCHD6Q9BRQ6 235 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 GABARAPL3Q9BY60 117 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 CHST5Q9GZS9 411 aa5.38□□□□□ -1.55
VPS53-213ENST00000572334 PPIL3Q9H2H8 161 aaKnown RBP5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms