RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 FOXI3A8MTJ6 420 aaPredicted RBP12.46□□□□□ -0.41
VPS35-210ENST00000568784 TMEM50AO95807 157 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 IGHV2-5P01817 119 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 RFPL3SP0C7P2 107 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 RNF224P0DH78 156 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HOXA5P20719 270 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 FOLR3P41439 243 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 SUCLG1P53597 346 aaKnown RBP12.46□□□□□ -0.41
VPS35-210ENST00000568784 ARF1P84077 181 aaKnown RBP12.46□□□□□ -0.41
VPS35-210ENST00000568784 ELOBQ15370 118 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIST3H3Q16695 136 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 HIKESHIQ53FT3 197 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 SLC25A53Q5H9E4 307 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 ZNF808Q8N4W9 903 aaPredicted RBP12.46□□□□□ -0.41
VPS35-210ENST00000568784 EGLN1Q9GZT9 426 aa12.46□□□□□ -0.41
VPS35-210ENST00000568784 SYNGR1O43759 233 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 SYNGR3O43761 229 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 ICAM4Q14773 271 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 KHDC3LQ587J8 217 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 OR4D5Q8NGN0 318 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 SSC4DQ8WTU2 575 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 FRZBQ92765 325 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 TMEM54Q969K7 222 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 SDSLQ96GA7 329 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 OR5B12Q96R08 314 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 WNT5BQ9H1J7 359 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 VSIRQ9H7M9 311 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 RPRMQ9NS64 109 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 USF3Q68DE3 2245 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 A0A1B0GV90 55 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 SLC22A20A6NK97 555 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 LYSMD4Q5XG99 296 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 CPT1CQ8TCG5 803 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 WFIKKN1Q96NZ8 548 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 SLC25A22Q9H936 323 aa12.46□□□□□ -0.42
VPS35-210ENST00000568784 KIR2DS1A0A191URI9 304 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 CLDN34H7C241 214 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 DFFBO76075 338 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 CD63P08962 238 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 FKBP2P26885 142 aaKnown RBP12.45□□□□□ -0.42
VPS35-210ENST00000568784 NTF4P34130 210 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 KIR2DS4P43632 304 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 RAC3P60763 192 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 PLP2Q04941 152 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 KIR2DS1Q14954 304 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 LTC4SQ16873 150 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 TMEM211Q6ICI0 200 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 ZNF600Q6ZNG1 722 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 LRP11Q86VZ4 500 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 PLPPR2Q96GM1 343 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 POM121Q96HA1 1249 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 ATP5SQ99766 215 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 C12orf49Q9H741 205 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 SEBOXQ9HB31 216 aaPredicted RBP12.45□□□□□ -0.42
VPS35-210ENST00000568784 SEC14L6B5MCN3 397 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 SOD3P08294 240 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 PLA2G5P39877 138 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 PCOLCEQ15113 449 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 SPSB3Q6PJ21 355 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 HLA-CQ95604 372 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 PACRGQ96M98 296 aaPredicted RBP12.45□□□□□ -0.42
VPS35-210ENST00000568784 CNOT1A5YKK6 2376 aaKnown RBP12.45□□□□□ -0.42
VPS35-210ENST00000568784 CA11O75493 328 aa12.45□□□□□ -0.42
VPS35-210ENST00000568784 IGLV3-12A0A075B6K2 115 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 OR5H1A6NKK0 313 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 NGFP01138 241 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 CTSSP25774 331 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 CLN3Q13286 438 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 ZDHHC23Q8IYP9 409 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 CARFQ8N187 725 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 IFI44Q8TCB0 444 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 A0A087X0M5 115 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 A0A1B0GX30 115 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 BTBD17A6NE02 478 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 KRASP01116 189 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 FADS6Q8N9I5 356 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 GPR146Q96CH1 333 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 C10orf35Q96D05 121 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 WASF3Q9UPY6 502 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 RPL36A-HNRNPH2H7BZ11 118 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 IGHV2-70P01814 119 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 SSX3Q99909 188 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 GPR35Q9HC97 309 aa12.44□□□□□ -0.42
VPS35-210ENST00000568784 MAP1LC3B2A6NCE7 125 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 CST2P09228 141 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 TAS2R30P59541 319 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 H3F3AP84243 136 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 C3AR1Q16581 482 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 FAM185AQ8N0U4 392 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 AGBL5Q8NDL9 886 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 OR2V1Q8NHB1 315 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 DUSP23Q9BVJ7 150 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 MAP1LC3BQ9GZQ8 125 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 DMRT1Q9Y5R6 373 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 LRP4O75096 1905 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 FRYLO94915 3013 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 hCG_38984A0A1B0GV85 526 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 CYTIPO60759 359 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 IFNA1P01562 189 aa12.43□□□□□ -0.42
VPS35-210ENST00000568784 PLGLB1Q02325 96 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms