RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 SSTR5P35346 364 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 PRRX1P54821 245 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 UNC119Q13432 240 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 C17orf58Q2M2W7 97 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 HES5Q5TA89 166 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 DHRS7BQ6IAN0 325 aaPredicted RBP10.55□□□□□ -0.72
CLK3-224ENST00000568605 OR10K2Q6IF99 312 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 LIAT1Q6ZQX7 453 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 TPRA1Q86W33 373 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 ABHD12Q8N2K0 398 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 OR9G1Q8NH87 305 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 FAM3DQ96BQ1 224 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 KIRREL1Q96J84 757 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 KCTD7Q96MP8 289 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 GFI1Q99684 422 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 SSX3Q99909 188 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 MEGF9Q9H1U4 602 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 RAB18Q9NP72 206 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 TXNL4BQ9NX01 149 aaKnown RBP10.55□□□□□ -0.72
CLK3-224ENST00000568605 ZNF581Q9P0T4 197 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 FBLN5Q9UBX5 448 aa10.55□□□□□ -0.72
CLK3-224ENST00000568605 FAM172BPA6NC97 362 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 FAM181BA6NEQ2 426 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 IFITM5A6NNB3 132 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 NPIPB11E5RHQ5 1161 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 H3BUX3 64 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 SPINT2O43291 252 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 ORC5O43913 435 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 GPR137BO60478 399 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 CD36P16671 472 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 CHATP28329 748 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 COMPP49747 757 aaPredicted RBP10.54□□□□□ -0.72
CLK3-224ENST00000568605 SSX2Q16385 188 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 SLC16A12Q6ZSM3 486 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 ZNF554Q86TJ5 538 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 OR51D1Q8NGF3 324 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 OR56B1Q8NGI3 324 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 OR4F5Q8NH21 305 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 KCNK15Q9H427 330 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 ZNF696Q9H7X3 374 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 LINC00574Q9H8X3 128 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 ZNF286AQ9HBT8 521 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 KCNIP1Q9NZI2 227 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 PITPNC1Q9UKF7 332 aa10.54□□□□□ -0.72
CLK3-224ENST00000568605 LOC100506127A0A0U1RQW1 187 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 A0A1B0GUS0 222 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 UBE2QL1A1L167 161 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 VGLL3A8MV65 326 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 LEUTXA8MZ59 168 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 F2RL2O00254 374 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 MMP23AO75900 390 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 IGLV1-47P01700 117 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 MT-ND4P03905 459 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 GADD45AP24522 165 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 BLVRBP30043 206 aaPredicted RBP10.53□□□□□ -0.72
CLK3-224ENST00000568605 CLDN12P56749 244 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 QRFPP83859 136 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 HLA-DRB5Q30154 266 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 SIGIRRQ6IA17 410 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 CCDC144NLQ6NUI1 221 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 BRICD5Q6PL45 260 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 MOB1BQ7L9L4 216 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 LHFPL4Q7Z7J7 247 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 GAPTQ8N292 157 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 OR52M1Q8NGK5 317 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 OR4P4Q8NGL7 312 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 CCDC107Q8WV48 283 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 ARL11Q969Q4 196 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 CHCHD6Q9BRQ6 235 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 NICN1Q9BSH3 213 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 LPAR5Q9H1C0 372 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 MMP28Q9H239 520 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 LIN7BQ9HAP6 207 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 CHMP1AQ9HD42 196 aaPredicted RBP10.53□□□□□ -0.72
CLK3-224ENST00000568605 PLEKHJ1Q9NW61 149 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 DPM3Q9P2X0 92 aa10.53□□□□□ -0.72
CLK3-224ENST00000568605 NOTOA8MTQ0 251 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 OOSP1A8MZH6 123 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 SDCBPO00560 298 aaPredicted RBP10.52□□□□□ -0.73
CLK3-224ENST00000568605 CGB3P0DN86 165 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 CGB7P0DN87 165 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 GDNFP39905 211 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 DYNLT3P51808 116 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 RAG2P55895 527 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 OR10A3P58181 314 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 MRPS15P82914 257 aaKnown RBP10.52□□□□□ -0.73
CLK3-224ENST00000568605 LTC4SQ16873 150 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 Q3ZCU0 254 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 AWAT1Q58HT5 328 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 C6orf201Q7Z4U5 140 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 C3orf56Q8N813 242 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 DTX3Q8N9I9 347 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 OR4K15Q8NH41 348 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 C17orf50Q8WW18 174 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 OR51E2Q9H255 320 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 RIMS4Q9H426 269 aaPredicted RBP10.52□□□□□ -0.73
CLK3-224ENST00000568605 RAB22AQ9UL26 194 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 HSF4Q9ULV5 492 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 MGAT4AQ9UM21 535 aa10.52□□□□□ -0.73
CLK3-224ENST00000568605 HILPDAQ9Y5L2 63 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms