RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 LSM6P62312 80 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 ARF6P62330 175 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CD164Q04900 197 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 C2orf54Q08AI8 447 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 STX4Q12846 297 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 MLLT11Q13015 90 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 PDK2Q15119 407 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 TRAM1Q15629 374 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 TRIP13Q15645 432 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 OGFRL1Q5TC84 451 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 HBMQ6B0K9 141 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 AKAP14Q86UN6 197 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SLC13A5Q86YT5 568 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 C10orf67Q8IYJ2 551 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ZFP82Q8N141 532 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 OR8G5Q8NG78 346 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 OR8K1Q8NGG5 319 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 OR2AE1Q8NHA4 323 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 DOK4Q8TEW6 326 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 TMEM234Q8WY98 164 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 C22orf15Q8WYQ4 148 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 YIPF5Q969M3 257 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 PTH2Q96A98 100 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 PPWD1Q96BP3 646 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 OPTNQ96CV9 577 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CMTM5Q96DZ9 223 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SMIM19Q96E16 107 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 YIPF6Q96EC8 236 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 PPP1R36Q96LQ0 422 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CCDC42Q96M95 316 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 PACRGQ96M98 296 aaPredicted RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 VAT1Q99536 393 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 GPR22Q99680 433 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 BCL2L14Q9BZR8 327 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 NXF2Q9GZY0 626 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 ARL6Q9H0F7 186 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CENPHQ9H3R5 247 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 RDH14Q9HBH5 336 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ACOT13Q9NPJ3 140 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 MRPL40Q9NQ50 206 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 INIPQ9NRY2 104 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 FGFR1OP2Q9NVK5 253 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 BABAM2Q9NXR7 383 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 GUCA1BQ9UMX6 200 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SLC22A13Q9Y226 551 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 AP3M1Q9Y2T2 418 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 OR51B2Q9Y5P1 312 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 USH1CQ9Y6N9 552 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 C9orf84Q5VXU9 1444 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SPATA31E1Q6ZUB1 1445 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 VWDEQ8N2E2 1590 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 ICE1Q9Y2F5 2266 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 SETD1AO15047 1707 aaKnown RBP0.86□□□□□ -2.27
VPS35-207ENST00000568191 SNAPC4Q5SXM2 1469 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 CAMSAP1Q5T5Y3 1602 aa0.86□□□□□ -2.27
VPS35-207ENST00000568191 MYH3P11055 1940 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 ATG2BQ96BY7 2078 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 ROCK1Q13464 1354 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 EIF3AQ14152 1382 aaKnown RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 ABCC11Q96J66 1382 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 ZNF608Q9ULD9 1512 aaPredicted RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 PBRM1Q86U86 1689 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 CHD2O14647 1828 aaKnown RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 YLPM1P49750 1951 aaKnown RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 IGHV6-1A0A0B4J1U7 121 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 FAM240AA0A1B0GVK7 77 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 TINCRA0A1B0GVN0 87 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 OR2AT4A6NND4 320 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 FHAD1B1AJZ9 1412 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 C21orf140B9A014 251 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 TMEM238C9JI98 176 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 F5H5T6 163 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 LINC01619G3V211 115 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 H0YJX3 145 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 H3BQV1 296 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 M0R1B8 84 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 CXCR6O00574 342 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 TGOLN2O43493 480 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 DENRO43583 198 aaKnown RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 SYNGR1O43759 233 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 CIAO1O76071 339 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 PCF11O94913 1555 aaKnown RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 ZFYVE9O95405 1425 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 TTC4O95801 387 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 TRGV3P03979 118 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 RLN2P04090 185 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 PRB1P04280 392 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 IL6P05231 212 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 CALB1P05937 261 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 FABP1P07148 127 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 C8orf88P0DMB2 117 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 SLC2A1P11166 492 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 PVALBP20472 110 aaPredicted RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 CXCR1P25024 350 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 GTF2H1P32780 548 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 RPA3P35244 121 aaPredicted RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 TUFMP49411 452 aaKnown RBP0.85□□□□□ -2.27
VPS35-207ENST00000568191 RAP1GDS1P52306 607 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 DLX6P56179 175 aa0.85□□□□□ -2.27
VPS35-207ENST00000568191 RAB38P57729 211 aa0.85□□□□□ -2.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms