RNA–Protein interactions for RNA: ENST00000565047.1

CLN3-213, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 461 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-213ENST00000565047 SLC25A33Q9BSK2 321 aa11.84□□□□□ -0.51
CLN3-213ENST00000565047 LSM2Q9Y333 95 aaKnown RBP11.84□□□□□ -0.51
CLN3-213ENST00000565047 PNMA8CA0A1B0GUJ8 204 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 G3V4G9 280 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 CD37P11049 281 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 CELP19835 753 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 VDAC2P45880 294 aaPredicted RBP11.83□□□□□ -0.52
CLN3-213ENST00000565047 INSL4Q14641 139 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 SIGIRRQ6IA17 410 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 CCDC144NLQ6NUI1 221 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 GLIPR1L1Q6UWM5 242 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 C8orf31Q8N9H6 132 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 TMEM104Q8NE00 496 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 NRG4Q8WWG1 115 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 SGCDQ92629 289 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 MUL1Q969V5 352 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 CKLFQ9UBR5 152 aa11.83□□□□□ -0.52
CLN3-213ENST00000565047 TMEM30CPA0ZSE6 113 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 SH2D7A6NKC9 451 aaPredicted RBP11.82□□□□□ -0.52
CLN3-213ENST00000565047 ORC5O43913 435 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 SC5DO75845 299 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 CDK1P06493 297 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 EMX1Q04741 257 aaPredicted RBP11.82□□□□□ -0.52
CLN3-213ENST00000565047 EBI3Q14213 229 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 GPR176Q14439 515 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 RBM39Q14498 530 aaKnown RBP11.82□□□□□ -0.52
CLN3-213ENST00000565047 ABCA11PQ4W5N1 156 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 STX19Q8N4C7 294 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 LINC00311Q8N616 119 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 OR52M1Q8NGK5 317 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 ST6GALNAC6Q969X2 333 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 DCLRE1BQ9H816 532 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 PCDHB16Q9NRJ7 776 aa11.82□□□□□ -0.52
CLN3-213ENST00000565047 MRPS28Q9Y2Q9 187 aaKnown RBP11.82□□□□□ -0.52
CLN3-213ENST00000565047 PLXNB1O43157 2135 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 A0A1W2PPE3 182 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 MAS1P04201 325 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 LPLP06858 475 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 SNRNP70P08621 437 aaKnown RBP11.81□□□□□ -0.52
CLN3-213ENST00000565047 FAM106CPP0CH98 169 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 MNDAP41218 407 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 ARHGDIBP52566 201 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 ZNF816Q0VGE8 651 aaPredicted RBP11.81□□□□□ -0.52
CLN3-213ENST00000565047 MADCAM1Q13477 382 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 IRF3Q14653 427 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 LTC4SQ16873 150 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 NSUN5P1Q3KNT7 163 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 C6orf141Q5SZD1 244 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 ATAD3CQ5T2N8 411 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 C10orf99Q6UWK7 81 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 JAGN1Q8N5M9 183 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 DRAM1Q8N682 238 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 WFDC9Q8NEX5 89 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 OR5AU1Q8NGC0 362 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 OR56B4Q8NH76 319 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 TOMM40LQ969M1 308 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 RPEQ96AT9 228 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 AKR1E2Q96JD6 320 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 Q96M66 194 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 S100A13Q99584 98 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 UQCC2Q9BRT2 126 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 GFOD1Q9NXC2 390 aa11.81□□□□□ -0.52
CLN3-213ENST00000565047 AMMECR1Q9Y4X0 333 aaPredicted RBP11.81□□□□□ -0.52
CLN3-213ENST00000565047 FAM90A10PA6NDY2 464 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 FAM90A7PA6NKC0 464 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 FAM90A23PA8MXZ1 464 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 C12orf77C9JDV5 145 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 H3BUI4 141 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 MYL12BO14950 172 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 GNG10P50151 68 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 RAB7AP51149 207 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 ZNF134P52741 427 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 SLC35A2P78381 396 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 FAM27D1Q5T7N8 215 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 LRRTM1Q86UE6 522 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 OR8H3Q8N146 312 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 Q8N6K4 173 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 ZNF439Q8NDP4 499 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 UBALD1Q8TB05 177 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 CCDC107Q8WV48 283 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 CAPSLQ8WWF8 208 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 ARL11Q969Q4 196 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 BANF2Q9H503 90 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 SPACA1Q9HBV2 294 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 ERGIC3Q9Y282 383 aa11.8□□□□□ -0.52
CLN3-213ENST00000565047 M0QZK8 103 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 GLAP06280 429 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 MGMTP16455 207 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 VHLP40337 213 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 Q3ZCU0 254 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 ACSM3Q53FZ2 586 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 C1orf100Q5SVJ3 147 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 SYT6Q5T7P8 510 aaPredicted RBP11.79□□□□□ -0.52
CLN3-213ENST00000565047 RAB12Q6IQ22 244 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 NKAIN3Q8N8D7 197 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 C5orf56Q8N8D9 126 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 DUSP21Q9H596 190 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 MBNL3Q9NUK0 354 aaKnown RBP11.79□□□□□ -0.52
CLN3-213ENST00000565047 MOB4Q9Y3A3 225 aa11.79□□□□□ -0.52
CLN3-213ENST00000565047 IGHV1-3A0A0C4DH29 117 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 80.7 ms