RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 ST3GAL1Q11201 340 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 MELKQ14680 651 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SIX1Q15475 284 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 GUSBP1Q15486 140 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 BATFQ16520 125 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 IZUMO4Q1ZYL8 232 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 DMRTC1Q5HYR2 192 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SPANXN3Q5MJ09 141 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 ALKAL2Q6UX46 152 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 FAM19A1Q7Z5A9 133 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 HAPLN4Q86UW8 402 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 GKN2Q86XP6 184 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 FBXO16Q8IX29 292 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 SLC35F2Q8IXU6 374 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 C20orf196Q8IYI0 205 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 FAM71E2Q8N5Q1 922 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 ZNF740Q8NDX6 193 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 MDS2Q8NDY4 140 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 NFAM1Q8NET5 270 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 OR8G5Q8NG78 346 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 OR4K1Q8NGD4 311 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 OR52E2Q8NGJ4 325 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 OR4L1Q8NH43 312 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 FBXO25Q8TCJ0 367 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 TMEM106AQ96A25 262 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 UPRTQ96BW1 309 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 TSPAN32Q96QS1 320 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 PKMYT1Q99640 499 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 NKX3-1Q99801 234 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 C16orf70Q9BSU1 422 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 DERL1Q9BUN8 251 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 ZNF471Q9BX82 626 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 C1QTNF6Q9BXI9 259 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 C1QTNF4Q9BXJ3 329 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 C6orf106Q9H6K1 298 aaPredicted RBP4.26□□□□□ -1.73
VPS35-205ENST00000563984 CWH43Q9H720 699 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SH2D2AQ9NP31 389 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SLC52A3Q9NQ40 469 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 CYSLTR1Q9Y271 337 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 WIPI2Q9Y4P8 454 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 FLVCR1Q9Y5Y0 555 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 DCCP43146 1447 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 ITSN1Q15811 1721 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 SLIT3O75094 1523 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 EFCAB6Q5THR3 1501 aa4.26□□□□□ -1.73
VPS35-205ENST00000563984 FOCADQ5VW36 1801 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 BCL9LQ86UU0 1499 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 LTN1O94822 1766 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 LOC102724200A0A096LPH7 203 aaPredicted RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 SMIM28A0A1B0GU29 152 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 FAM157AC9JC47 383 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 TAPBPO15533 448 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 GRAP2O75791 330 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 ATP5LO75964 103 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 KBTBD11O94819 623 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CFDP00746 253 aaPredicted RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 CATP04040 527 aaKnown RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 IGF1P05019 195 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 FAM157CP0CG43 387 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CT45A8P0DMV1 189 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CT45A9P0DMV2 189 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 FABP4P15090 132 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 PGAM2P15259 253 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 PGCP20142 388 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 SRIP30626 198 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 OPRD1P41143 372 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 TAF6P49848 677 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 GZMMP51124 257 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 TNFAIP6P98066 277 aaPredicted RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 FABP5Q01469 135 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 TMEM267Q0VDI3 215 aaPredicted RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 RGNQ15493 299 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 ACOT6Q3I5F7 207 aaPredicted RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 SLC25A35Q3KQZ1 300 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CT45A2Q5DJT8 189 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 HBMQ6B0K9 141 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CDC42EP5Q6NZY7 148 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 DNAJC24Q6P3W2 148 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 NEGR1Q7Z3B1 354 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CMC1Q7Z7K0 106 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 GPD1LQ8N335 351 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 PNKDQ8N490 385 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 BMPERQ8N8U9 685 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 GJC3Q8NFK1 279 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 OR2AJ1Q8NGZ0 328 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 OR4C3Q8NH37 302 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 BLNKQ8WV28 456 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 PP6455Q8WZ26 134 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 TMEM18Q96B42 140 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 CIB3Q96Q77 187 aaPredicted RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 TBX15Q96SF7 602 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 NRTNQ99748 197 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 GABRG3Q99928 467 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 SLC25A39Q9BZJ4 359 aaPredicted RBP4.25□□□□□ -1.73
VPS35-205ENST00000563984 SELENOIQ9C0D9 397 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 NPFFR1Q9GZQ6 430 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 COA1Q9GZY4 146 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 SH3BGRL3Q9H299 93 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 IFI27L2Q9H2X8 130 aa4.25□□□□□ -1.73
VPS35-205ENST00000563984 RBKSQ9H477 322 aa4.25□□□□□ -1.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms