RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 GAR1Q9NY12 217 aaKnown RBP11.32□□□□□ -0.6
CLN3-210ENST00000563874 KLF7O75840 302 aaPredicted RBP11.32□□□□□ -0.6
CLN3-210ENST00000563874 B3GALT5-AS1P59052 145 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 RAB11AP62491 216 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 ID3Q02535 119 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 MPV17LQ2QL34 196 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 GGNQ86UU5 652 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 ZNF383Q8NA42 475 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 RSG1Q9BU20 258 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 SF3B5Q9BWJ5 86 aaKnown RBP11.32□□□□□ -0.6
CLN3-210ENST00000563874 GPR61Q9BZJ8 451 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 PLSCR2Q9NRY7 297 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 DOCK7Q96N67 2140 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 LOC102723996A0A087X1L8 192 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 ARGFXA6NJG6 315 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 ZNF732B4DXR9 585 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 KLK3P07288 261 aaPredicted RBP11.32□□□□□ -0.6
CLN3-210ENST00000563874 VDAC1P21796 283 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 HOXA6P31267 233 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 PAX9P55771 341 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 FAM185AQ8N0U4 392 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 GNPNAT1Q96EK6 184 aaPredicted RBP11.32□□□□□ -0.6
CLN3-210ENST00000563874 GPR35Q9HC97 309 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 TAAR3PQ9P1P4 343 aa11.32□□□□□ -0.6
CLN3-210ENST00000563874 FGF8P55075 233 aaPredicted RBP11.31□□□□□ -0.6
CLN3-210ENST00000563874 TLE1Q04724 770 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 HNF4GQ14541 408 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 ZNF506Q5JVG8 444 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 LCN15Q6UWW0 184 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 ZNF488Q96MN9 340 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 MRPS17Q9Y2R5 130 aaKnown RBP11.31□□□□□ -0.6
CLN3-210ENST00000563874 BTBD17A6NE02 478 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 GJE1A6NN92 205 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 HSPB1P04792 205 aaKnown RBP11.31□□□□□ -0.6
CLN3-210ENST00000563874 SOD3P08294 240 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 MDKP21741 143 aaPredicted RBP11.31□□□□□ -0.6
CLN3-210ENST00000563874 PLA2G5P39877 138 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 TLE4Q04727 773 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 C20orf204Q6ZNR8 217 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 MYPOPQ86VE0 399 aaPredicted RBP11.31□□□□□ -0.6
CLN3-210ENST00000563874 DMRTC2Q8IXT2 367 aaPredicted RBP11.31□□□□□ -0.6
CLN3-210ENST00000563874 ATP5SQ99766 215 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 VSIRQ9H7M9 311 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 SH2D2AQ9NP31 389 aa11.31□□□□□ -0.6
CLN3-210ENST00000563874 HS3ST1O14792 307 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 UCP1P25874 307 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 CLDN15P56746 228 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 PRDX4Q13162 271 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 KRTAP27-1Q3LI81 207 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 DUSP23Q9BVJ7 150 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 ZNF665Q9H7R5 613 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 MTCH1Q9NZJ7 389 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 DMRT1Q9Y5R6 373 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 NAPSAO96009 420 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 RNASE11Q8TAA1 199 aaKnown RBP11.3□□□□□ -0.6
CLN3-210ENST00000563874 SNIP1Q8TAD8 396 aaKnown RBP11.3□□□□□ -0.6
CLN3-210ENST00000563874 RDH5Q92781 318 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 WDR54Q9H977 334 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 RNF115Q9Y4L5 304 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 MUC3AQ02505 3323 aa11.3□□□□□ -0.6
CLN3-210ENST00000563874 DIDO1Q9BTC0 2240 aaKnown RBP11.3□□□□□ -0.6
CLN3-210ENST00000563874 TRAV39A0A0B4J263 110 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 PGLYRP1O75594 196 aaPredicted RBP11.29□□□□□ -0.6
CLN3-210ENST00000563874 IAPPP10997 89 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 GLIPR1P48060 266 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 MLF1P58340 268 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 TAS2R30P59541 319 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 HLA-DRB3P79483 266 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 IGFBP7Q16270 282 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 AGBL5Q8NDL9 886 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 UBALD1Q8TB05 177 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 SAP25Q8TEE9 199 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 IL1F10Q8WWZ1 152 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 RHOVQ96L33 236 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 ZNF391Q9UJN7 358 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 A0A087WWC5 75 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 SYNGR1O43759 233 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 P04436 131 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 MMP7P09237 267 aaPredicted RBP11.29□□□□□ -0.6
CLN3-210ENST00000563874 PSG2P11465 335 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 CD200P41217 278 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 PCBD1P61457 104 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 SRYQ05066 204 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 SP5Q6BEB4 398 aaPredicted RBP11.29□□□□□ -0.6
CLN3-210ENST00000563874 OR2T2Q6IF00 324 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 SPEM1Q8N4L4 309 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 OR8G5Q8NG78 346 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 RPRMQ9NS64 109 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 NCKAP5O14513 1909 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 KIAA1549Q9HCM3 1950 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 AHCTF1Q8WYP5 2266 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 A0A1B0GV90 55 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 C5orf49A4QMS7 147 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 COX5BP10606 129 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 FOXG1P55316 489 aaPredicted RBP11.29□□□□□ -0.6
CLN3-210ENST00000563874 NKX6-1P78426 367 aaPredicted RBP11.29□□□□□ -0.6
CLN3-210ENST00000563874 BAXQ07812 192 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 Q6ZRM9 215 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 ZNF295-AS1Q8N0V1 137 aa11.29□□□□□ -0.6
CLN3-210ENST00000563874 PRR18Q8N4B5 295 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 55.2 ms