RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 PHF3Q92576 2039 aaKnown RBP11.49□□□□□ -0.57
CLK3-206ENST00000562078 CRYM-AS1A6NIL9 109 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 VSTM2BA6NLU5 285 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 YPEL1O60688 119 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 MPZL1O95297 269 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 OR5G3P0C626 314 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 GALR1P47211 349 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 CNN1P51911 297 aaKnown RBP11.48□□□□□ -0.57
CLK3-206ENST00000562078 FAM3BP58499 235 aaPredicted RBP11.48□□□□□ -0.57
CLK3-206ENST00000562078 FOXK1P85037 733 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 ROM1Q03395 351 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 IL24Q13007 206 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 TSPO2Q5TGU0 170 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 SLC25A24Q6NUK1 477 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 FBXW12Q6X9E4 464 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 CALHM1Q8IU99 346 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 TGIF2LYQ8IUE0 185 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 OR10G4Q8NGN3 311 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 ADAT3Q96EY9 351 aaPredicted RBP11.48□□□□□ -0.57
CLK3-206ENST00000562078 BOD1Q96IK1 185 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 YPEL2Q96QA6 119 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 ZNF2Q9BSG1 426 aaPredicted RBP11.48□□□□□ -0.57
CLK3-206ENST00000562078 ZNF319Q9P2F9 582 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 RPH3ALQ9UNE2 315 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 VDAC3Q9Y277 283 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 COL27A1Q8IZC6 1860 aaPredicted RBP11.48□□□□□ -0.57
CLK3-206ENST00000562078 IGKV1D-8A0A087WSZ0 117 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 CCL4P13236 92 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 IL11P20809 199 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 ZNF266Q14584 549 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 IL11RAQ14626 422 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 RTP5Q14D33 572 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 TMEM241Q24JQ0 296 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 TPTE2P1Q5T6R2 138 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 GLIPR1L1Q6UWM5 242 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 TEX43Q6ZNM6 134 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 ORAOV1Q8WV07 137 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 TMEM234Q8WY98 164 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 VPS25Q9BRG1 176 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 KLRF1Q9NZS2 232 aa11.48□□□□□ -0.57
CLK3-206ENST00000562078 MRPS28Q9Y2Q9 187 aaKnown RBP11.48□□□□□ -0.57
CLK3-206ENST00000562078 IGSF23A1L1A6 192 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 ANKUB1A6NFN9 424 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 HSBP1L1C9JCN9 74 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 ST8SIA3O43173 380 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 SLC16A7O60669 478 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 SRSF10O75494 262 aaKnown RBP11.47□□□□□ -0.57
CLK3-206ENST00000562078 ZNF205O95201 554 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 HSD11B1P28845 292 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 ZNF41P51814 821 aaPredicted RBP11.47□□□□□ -0.57
CLK3-206ENST00000562078 RPL27P61353 136 aaKnown RBP11.47□□□□□ -0.57
CLK3-206ENST00000562078 C17orf67Q0P5P2 114 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 TCF15Q12870 199 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 UBE2V1Q13404 147 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 KCTD18Q6PI47 426 aaPredicted RBP11.47□□□□□ -0.57
CLK3-206ENST00000562078 GCNT2Q8N0V5 402 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 PRSS33Q8NF86 280 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 ZNF519Q8TB69 540 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 TECTBQ96PL2 329 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 COL25A1Q9BXS0 654 aaPredicted RBP11.47□□□□□ -0.57
CLK3-206ENST00000562078 RBKSQ9H477 322 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 ZNF665Q9H7R5 613 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 RNF24Q9Y225 148 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 R4GMQ9 66 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 SHISA8B8ZZ34 492 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 OR2J2O76002 312 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 PPBPP02775 128 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 SFTPDP35247 375 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 ZNF93P35789 620 aaPredicted RBP11.47□□□□□ -0.57
CLK3-206ENST00000562078 CDKN1AP38936 164 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 CSNK1A1P48729 337 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 IL13RA2Q14627 380 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 TMEM183BQ1AE95 376 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 KIAA2026Q5HYC2 2103 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 NUDT16L1Q9BRJ7 211 aaKnown RBP11.47□□□□□ -0.57
CLK3-206ENST00000562078 PLSCR2Q9NRY7 297 aa11.47□□□□□ -0.57
CLK3-206ENST00000562078 PRSS37A4D1T9 235 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 TMEM238C9JI98 176 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 PLPP3O14495 311 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 LILRA1O75019 489 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 DXOO77932 396 aaKnown RBP11.46□□□□□ -0.57
CLK3-206ENST00000562078 ONECUT2O95948 504 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 TAS2R46P59540 309 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 ZNF92Q03936 586 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 ACOT6Q3I5F7 207 aaPredicted RBP11.46□□□□□ -0.57
CLK3-206ENST00000562078 Q6ZWC4 215 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 ST8SIA1Q92185 356 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 RASL10BQ96S79 203 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 VAMP8Q9BV40 100 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 TXNIPQ9H3M7 391 aa11.46□□□□□ -0.57
CLK3-206ENST00000562078 TNFSF12-TNFSF13A0A0A6YY99 330 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 TNFSF12O43508 249 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 BCL2P10415 239 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 HLA-DOBP13765 273 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 OR3A4PP47883 348 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 PIGPP57054 158 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 DMRTC1Q5HYR2 192 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 OR2C3Q8N628 320 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 OR10G3Q8NGC4 313 aa11.46□□□□□ -0.58
CLK3-206ENST00000562078 STRADBQ9C0K7 418 aa11.46□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms