RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 RDH5Q92781 318 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 RBPMSQ93062 196 aaKnown RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 TMEM230Q96A57 120 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 TMEM56Q96MV1 263 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 AQP10Q96PS8 301 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 ARPC5LQ9BPX5 153 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 AIFM2Q9BRQ8 373 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 GSX2Q9BZM3 304 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 TMEM222Q9H0R3 208 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 SLC25A32Q9H2D1 315 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 ASF1BQ9NVP2 202 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 RNF7Q9UBF6 113 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 DUSP13Q9UII6 198 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 RAXQ9Y2V3 346 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 NSG2Q9Y328 171 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 UBE2J1Q9Y385 318 aaPredicted RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 RBM7Q9Y580 266 aaKnown RBP6.36□□□□□ -1.39
VPS39-204ENST00000561818 TMEM56-RWDD3S4R434 201 aa6.36□□□□□ -1.39
VPS39-204ENST00000561818 BORCS7-ASMTA0A0B4J1R7 106 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 TRAV38-1A0A0B4J264 116 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 TRGV8A0A0C4DH27 118 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 A0A1B0GU03 582 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 C13orf42A0A1B0GVH6 325 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 A0A1W2PPH5 198 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 A0A1W2PR80 420 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 CLEC18AA5D8T8 446 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 B9A039 149 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 FAM90A26D6RGX4 464 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 BET1O15155 118 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 GPR37O15354 613 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 ST8SIA3O43173 380 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 PHF1O43189 567 aaPredicted RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 GPR137BO60478 399 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 RHBDL1O75783 438 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 JTBO76095 146 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 AGFG2O95081 481 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 GAPDHP04406 335 aaKnown RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 CD3EP07766 207 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 FAM87AP0C7U9 286 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 AADACP22760 399 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 UCP1P25874 307 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 GABRA2P47869 451 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 FXYD4P59646 89 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 SUPT4H1P63272 117 aaKnown RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 IFITM2Q01629 132 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 BAXQ07812 192 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 ZNF266Q14584 549 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 TMEM187Q14656 261 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 SLC9A3R2Q15599 337 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 IAH1Q2TAA2 248 aaPredicted RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 LGALSLQ3ZCW2 172 aaPredicted RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 KRBOX4Q5JUW0 171 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 LAMTOR1Q6IAA8 161 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 UNQ6494/PRO21346Q6UXR6 183 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 ZNF66Q6ZN08 573 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 TMUB2Q71RG4 321 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 MYPOPQ86VE0 399 aaPredicted RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 ZNF645Q8N7E2 425 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 CLEC18CQ8NCF0 446 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 ADAD2Q8NCV1 583 aaKnown RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 LRRC29Q8WV35 223 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 ZCCHC14Q8WYQ9 949 aaKnown RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 DCUN1D4Q92564 292 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 LSM10Q969L4 123 aaKnown RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 OR2V2Q96R30 315 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 HSD17B10Q99714 261 aaKnown RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 HDHD3Q9BSH5 251 aaPredicted RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 FGF23Q9GZV9 251 aaPredicted RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 SLC25A31Q9H0C2 315 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 PFDN2Q9UHV9 154 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 URB1O60287 2271 aaKnown RBP6.35□□□□□ -1.39
VPS39-204ENST00000561818 CFAP54Q96N23 3096 aa6.35□□□□□ -1.39
VPS39-204ENST00000561818 TRGV10A0A0A0MS01 117 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 LINC00862A6NCI5 91 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 FAM90A9PA6NNJ1 464 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 C17orf100A8MU93 164 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 ATP6V1G2-DDX39BF2Z307 99 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 G3V3Q6 166 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 K7EPK0 472 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 DLL1O00548 723 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 ABCD4O14678 606 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 TSC22D2O75157 780 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 MED6O75586 246 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 DEDDO75618 318 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 HEXAP06865 529 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 OR5AC1P0C628 307 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 SPINK2P20155 84 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 F2RP25116 425 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 GNRHRP30968 328 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 PRDX2P32119 198 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 P2RY1P47900 373 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 RAB5CP51148 216 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 ERVS71-1P61550 626 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 TAGLNQ01995 201 aaKnown RBP6.34□□□□□ -1.39
VPS39-204ENST00000561818 MEF2CQ06413 473 aaPredicted RBP6.34□□□□□ -1.39
VPS39-204ENST00000561818 FAM27E3Q08E93 113 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 BAMBIQ13145 260 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 TSC22D1Q15714 1073 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 MIDNQ504T8 468 aa6.34□□□□□ -1.39
VPS39-204ENST00000561818 TEX36Q5VZQ5 186 aa6.34□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 41.6 ms