RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 TMEM203Q969S6 136 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 FAM46BQ96A09 425 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 RPEQ96AT9 228 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 MRPS24Q96EL2 167 aaKnown RBP12.56□□□□□ -0.4
VPS39-203ENST00000561797 DUSP21Q9H596 190 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 LINC00574Q9H8X3 128 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 SERTAD4Q9NUC0 356 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 WNK1Q9H4A3 2382 aa12.56□□□□□ -0.4
VPS39-203ENST00000561797 AIPO00170 330 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 MT-ND4P03905 459 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 MNDAP41218 407 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 GPR50Q13585 617 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 FBLN7Q53RD9 439 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 RAB12Q6IQ22 244 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 ZNF497Q6ZNH5 498 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 Q8N2B8 174 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 OR10A7Q8NGE5 316 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 FAM110DQ8TAY7 271 aaPredicted RBP12.55□□□□□ -0.4
VPS39-203ENST00000561797 CAPSLQ8WWF8 208 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 UFD1Q92890 307 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 TOMM40LQ969M1 308 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 CNBD2Q96M20 576 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 UQCC2Q9BRT2 126 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 MMP27Q9H306 513 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 SPACA1Q9HBV2 294 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 ETAA1Q9NY74 926 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 AMMECR1Q9Y4X0 333 aaPredicted RBP12.55□□□□□ -0.4
VPS39-203ENST00000561797 PEX16Q9Y5Y5 336 aa12.55□□□□□ -0.4
VPS39-203ENST00000561797 IGHV3-43A0A0B4J1X8 118 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 UBE2QL1A1L167 161 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 SDCBPO00560 298 aaPredicted RBP12.54□□□□□ -0.4
VPS39-203ENST00000561797 PEX14O75381 377 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 CSF1P09603 554 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 IGHV3-43DP0DP04 118 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 CRHBPP24387 322 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 MAP2K4P45985 399 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 DIAPH2-AS1Q14236 149 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 C2orf68Q2NKX9 166 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 TMEM95Q3KNT9 176 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 GLT8D1Q68CQ7 371 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 CCDC144NLQ6NUI1 221 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 LRRTM1Q86UE6 522 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 OR4K15Q8NH41 348 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 CYYR1Q96J86 154 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 SLC25A33Q9BSK2 321 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 RCC2Q9P258 522 aaKnown RBP12.54□□□□□ -0.4
VPS39-203ENST00000561797 TRAPPC2LQ9UL33 140 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 MGAM2Q2M2H8 2515 aa12.54□□□□□ -0.4
VPS39-203ENST00000561797 OOSP1A8MZH6 123 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 C15orf65H3BRN8 121 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 MPIG6BO95866 241 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 SRMP19623 302 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 FUT3P21217 361 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 HSPA13P48723 471 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 RPS25P62851 125 aaKnown RBP12.53□□□□□ -0.4
VPS39-203ENST00000561797 HSD17B12Q53GQ0 312 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 SYT6Q5T7P8 510 aaPredicted RBP12.53□□□□□ -0.4
VPS39-203ENST00000561797 SIGIRRQ6IA17 410 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 OR10K2Q6IF99 312 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 FAM53AQ6NSI3 398 aaPredicted RBP12.53□□□□□ -0.4
VPS39-203ENST00000561797 SLC16A12Q6ZSM3 486 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 C16orf82Q7Z2V1 217 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 LYG1Q8N1E2 194 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 OR10X1Q8NGY0 326 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 CFHR4Q92496 578 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 PHYHIPQ92561 330 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 AKR1E2Q96JD6 320 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 Q96M66 194 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 CST11Q9H112 138 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 LIN7BQ9HAP6 207 aa12.53□□□□□ -0.4
VPS39-203ENST00000561797 FAM90A10PA6NDY2 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A18PA6NE21 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A16PA6NEW6 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A20PA6NIJ5 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A7PA6NKC0 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 SH2D7A6NKC9 451 aaPredicted RBP12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A12PA8MX19 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A5PA8MXJ8 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A23PA8MXZ1 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 ORC5O43913 435 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FBXO24O75426 580 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 SC5DO75845 299 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 UCHL1P09936 223 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A15PP0C7V4 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A13PP0C7W8 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A14PP0C7W9 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 FAM90A24PP0C7X0 464 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 CD28P10747 220 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 VDAC2P45880 294 aaPredicted RBP12.52□□□□□ -0.41
VPS39-203ENST00000561797 MADCAM1Q13477 382 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 TPBGQ13641 420 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 ABCA11PQ4W5N1 156 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 C1orf100Q5SVJ3 147 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 PRSS48Q7RTY5 328 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 PRR18Q8N4B5 295 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 OR56B4Q8NH76 319 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 RBM14Q96PK6 669 aaKnown RBP12.52□□□□□ -0.41
VPS39-203ENST00000561797 KCNK15Q9H427 330 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 GHRLQ9UBU3 117 aa12.52□□□□□ -0.41
VPS39-203ENST00000561797 C12orf77C9JDV5 145 aa12.51□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms