RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 METTL9Q9H1A3 318 aa15.03■□□□□ -0
VPS35-202ENST00000561713 TMEM138Q9NPI0 162 aa15.03■□□□□ -0
VPS35-202ENST00000561713 TMEM30CPA0ZSE6 113 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A18PA6NE21 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A16PA6NEW6 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A20PA6NIJ5 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A9PA6NNJ1 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A12PA8MX19 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A5PA8MXJ8 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 HSD17B6O14756 317 aa15.02■□□□□ -0
VPS35-202ENST00000561713 CSTBP04080 98 aaKnown RBP15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A15PP0C7V4 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A13PP0C7W8 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A14PP0C7W9 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 FAM90A24PP0C7X0 464 aa15.02■□□□□ -0
VPS35-202ENST00000561713 MYL12AP19105 171 aa15.02■□□□□ -0
VPS35-202ENST00000561713 DCKP27707 260 aa15.02■□□□□ -0
VPS35-202ENST00000561713 RIPK1Q13546 671 aa15.02■□□□□ -0
VPS35-202ENST00000561713 DOC2BQ14184 412 aa15.02■□□□□ -0
VPS35-202ENST00000561713 CCDC58Q4VC31 144 aa15.02■□□□□ -0
VPS35-202ENST00000561713 TMPRSS11AQ6ZMR5 421 aa15.02■□□□□ -0
VPS35-202ENST00000561713 ETV3LQ6ZN32 361 aa15.02■□□□□ -0
VPS35-202ENST00000561713 LINC00482Q8N8I6 264 aa15.02■□□□□ -0
VPS35-202ENST00000561713 HAVCR2Q8TDQ0 301 aa15.02■□□□□ -0
VPS35-202ENST00000561713 LINC00574Q9H8X3 128 aa15.02■□□□□ -0
VPS35-202ENST00000561713 PCDHB16Q9NRJ7 776 aa15.02■□□□□ -0
VPS35-202ENST00000561713 IL36GQ9NZH8 169 aa15.02■□□□□ -0
VPS35-202ENST00000561713 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.02■□□□□ -0
VPS35-202ENST00000561713 A0A1W2PPK0 400 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 M0QZK8 103 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 KCNJ3P48549 501 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 PAX5Q02548 391 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 C10orf67Q8IYJ2 551 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 GHSRQ92847 366 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 MUL1Q969V5 352 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 OR14A2Q96R54 314 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 NCOR1P1Q9H4R4 102 aa15.01□□□□□ -0.01
VPS35-202ENST00000561713 DIMT1Q9UNQ2 313 aaKnown RBP15.01□□□□□ -0.01
VPS35-202ENST00000561713 EXOSC1Q9Y3B2 195 aaKnown RBP15.01□□□□□ -0.01
VPS35-202ENST00000561713 TRBV5-5A0A0J9YX44 114 aa15□□□□□ -0.01
VPS35-202ENST00000561713 C15orf65H3BRN8 121 aa15□□□□□ -0.01
VPS35-202ENST00000561713 SDCBPO00560 298 aaPredicted RBP15□□□□□ -0.01
VPS35-202ENST00000561713 SLC31A2O15432 143 aa15□□□□□ -0.01
VPS35-202ENST00000561713 OGG1O15527 345 aa15□□□□□ -0.01
VPS35-202ENST00000561713 IGFBP3P17936 291 aaPredicted RBP15□□□□□ -0.01
VPS35-202ENST00000561713 RAB7AP51149 207 aa15□□□□□ -0.01
VPS35-202ENST00000561713 RPS11P62280 158 aaKnown RBP eCLIP15□□□□□ -0.01
VPS35-202ENST00000561713 NHLRC3Q5JS37 347 aa15□□□□□ -0.01
VPS35-202ENST00000561713 MOB3BQ86TA1 216 aa15□□□□□ -0.01
VPS35-202ENST00000561713 ARL11Q969Q4 196 aa15□□□□□ -0.01
VPS35-202ENST00000561713 PGLYRP3Q96LB9 341 aa15□□□□□ -0.01
VPS35-202ENST00000561713 S100A13Q99584 98 aa15□□□□□ -0.01
VPS35-202ENST00000561713 IFT22Q9H7X7 185 aa15□□□□□ -0.01
VPS35-202ENST00000561713 IGHV1-3A0A0C4DH29 117 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 SERPINE3A8MV23 424 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 CCRL2O00421 344 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 DMKNQ6E0U4 476 aaPredicted RBP14.99□□□□□ -0.01
VPS35-202ENST00000561713 C8orf86Q6ZUL3 223 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 THNSL2Q86YJ6 484 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 MRPL41Q8IXM3 137 aaKnown RBP14.99□□□□□ -0.01
VPS35-202ENST00000561713 OR8H3Q8N146 312 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 JAGN1Q8N5M9 183 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 RDH12Q96NR8 316 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 BABAM2Q9NXR7 383 aa14.99□□□□□ -0.01
VPS35-202ENST00000561713 MRPS28Q9Y2Q9 187 aaKnown RBP14.99□□□□□ -0.01
VPS35-202ENST00000561713 LINC01548A6NM66 108 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 AIPO00170 330 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 EBAG9O00559 213 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 RPL23AP62750 156 aaKnown RBP14.98□□□□□ -0.01
VPS35-202ENST00000561713 MPV17LQ2QL34 196 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 Q499Y3 187 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 OR10V1Q8NGI7 309 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 TMEM80Q96HE8 168 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 DUX3Q96PT4 197 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 BANF2Q9H503 90 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 GFOD1Q9NXC2 390 aa14.98□□□□□ -0.01
VPS35-202ENST00000561713 IRGMA1A4Y4 181 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 NUDT19A8MXV4 375 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 ZNF736B4DX44 427 aaPredicted RBP14.97□□□□□ -0.01
VPS35-202ENST00000561713 MAS1P04201 325 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 GNAO1P09471 354 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 GTF2F2P13984 249 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 FSTP19883 344 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 VHLP40337 213 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 ZNF816Q0VGE8 651 aaPredicted RBP14.97□□□□□ -0.01
VPS35-202ENST00000561713 GLIPR1L1Q6UWM5 242 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 ZNF497Q6ZNH5 498 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 LCNL1Q6ZST4 164 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 OR2W3Q7Z3T1 314 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 SLC35E3Q7Z769 313 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 LINC00596Q86U02 117 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 PRR18Q8N4B5 295 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 ZNF485Q8NCK3 441 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 KLHL30-AS1Q8NEE0 82 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 OR10A7Q8NGE5 316 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 OR4K15Q8NH41 348 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 DPF1Q92782 380 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 GGHQ92820 318 aa14.97□□□□□ -0.01
VPS35-202ENST00000561713 EAF1Q96JC9 268 aaPredicted RBP14.97□□□□□ -0.01
VPS35-202ENST00000561713 CKLFQ9UBR5 152 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms