RNA–Protein interactions for RNA: ENST00000559898.5

HDDC3-205, Transcript of HD domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene HDDC3, Length 1,024 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-205ENST00000559898 DERL3Q96Q80 235 aa14.08□□□□□ -0.16
HDDC3-205ENST00000559898 LINC00527Q9UJ94 153 aa14.08□□□□□ -0.16
HDDC3-205ENST00000559898 NOTCH3Q9UM47 2321 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 IRGMA1A4Y4 181 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 LINC01548A6NM66 108 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 CSTBP04080 98 aaKnown RBP14.07□□□□□ -0.16
HDDC3-205ENST00000559898 FSTP19883 344 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 CEACAM3P40198 252 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 YIF1BQ5BJH7 314 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 FAM27D1Q5T7N8 215 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 C18orf65Q6ZTR6 163 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 C16orf82Q7Z2V1 217 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 CENPVQ7Z7K6 275 aaPredicted RBP14.07□□□□□ -0.16
HDDC3-205ENST00000559898 JAGN1Q8N5M9 183 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 SETD9Q8NE22 299 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 MYDGFQ969H8 173 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 CPNE2Q96FN4 548 aaPredicted RBP14.07□□□□□ -0.16
HDDC3-205ENST00000559898 NOL4LQ96MY1 436 aaPredicted RBP14.07□□□□□ -0.16
HDDC3-205ENST00000559898 FKBP14Q9NWM8 211 aa14.07□□□□□ -0.16
HDDC3-205ENST00000559898 MRPS28Q9Y2Q9 187 aaKnown RBP14.07□□□□□ -0.16
HDDC3-205ENST00000559898 TMEM30CPA0ZSE6 113 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 CASQ2O14958 399 aaPredicted RBP14.06□□□□□ -0.16
HDDC3-205ENST00000559898 MT-ND4P03905 459 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 IGLL1P15814 213 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 CELP19835 753 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 LOXL3P58215 753 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 EMX1Q04741 257 aaPredicted RBP14.06□□□□□ -0.16
HDDC3-205ENST00000559898 SIGIRRQ6IA17 410 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 ZNF497Q6ZNH5 498 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 Q6ZPA2 131 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 C8orf59Q8N0T1 100 aaPredicted RBP14.06□□□□□ -0.16
HDDC3-205ENST00000559898 OR4K15Q8NH41 348 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 ARL11Q969Q4 196 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 KCNK15Q9H427 330 aa14.06□□□□□ -0.16
HDDC3-205ENST00000559898 TCRBV4S1A1TA0A5B7 111 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 ZNF736B4DX44 427 aaPredicted RBP14.05□□□□□ -0.16
HDDC3-205ENST00000559898 IGKV1D-33P01593 117 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 IGKV1-33P01594 117 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 MNDAP41218 407 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 KCNJ3P48549 501 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 ZNF329Q86UD4 541 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 NANOGP1Q8N7R0 232 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 C5orf56Q8N8D9 126 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 DTX3Q8N9I9 347 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 NEK7Q8TDX7 302 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 PHF21AQ96BD5 680 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 PAK1IP1Q9NWT1 392 aaPredicted RBP14.05□□□□□ -0.16
HDDC3-205ENST00000559898 CHCHD3Q9NX63 227 aaKnown RBP14.05□□□□□ -0.16
HDDC3-205ENST00000559898 CNOT2Q9NZN8 540 aaKnown RBP14.05□□□□□ -0.16
HDDC3-205ENST00000559898 RCC2Q9P258 522 aaKnown RBP14.05□□□□□ -0.16
HDDC3-205ENST00000559898 MOB4Q9Y3A3 225 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 HSPE1-MOB4S4R3N1 261 aa14.05□□□□□ -0.16
HDDC3-205ENST00000559898 EFCAB10A6NFE3 127 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 OOSP1A8MZH6 123 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 C12orf77C9JDV5 145 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 SDCBPO00560 298 aaPredicted RBP14.04□□□□□ -0.16
HDDC3-205ENST00000559898 GTF2F2P13984 249 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 TMEM11P17152 192 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 ZNF134P52741 427 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 WNT4P56705 351 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 MADCAM1Q13477 382 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 HES1Q14469 280 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 MPV17LQ2QL34 196 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 CCDC144NLQ6NUI1 221 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 THNSL2Q86YJ6 484 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 STX19Q8N4C7 294 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 OR1L1Q8NH94 360 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 NRG4Q8WWG1 115 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 FAM46BQ96A09 425 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 CREB3L1Q96BA8 519 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 S100A13Q99584 98 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 PLCXD1Q9NUJ7 323 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 GFOD1Q9NXC2 390 aa14.04□□□□□ -0.16
HDDC3-205ENST00000559898 AMMECR1Q9Y4X0 333 aaPredicted RBP14.04□□□□□ -0.16
HDDC3-205ENST00000559898 IGHV1-3A0A0C4DH29 117 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 UBE2QL1A1L167 161 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 AIPO00170 330 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 HSD17B6O14756 317 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 FAM106CPP0CH98 169 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 RCC1P18754 421 aaPredicted RBP14.03□□□□□ -0.16
HDDC3-205ENST00000559898 SYT6Q5T7P8 510 aaPredicted RBP14.03□□□□□ -0.16
HDDC3-205ENST00000559898 AWAT2Q6E213 333 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 OR10K2Q6IF99 312 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 RAB12Q6IQ22 244 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 MOB3BQ86TA1 216 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 ZNF439Q8NDP4 499 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 OR4F17Q8NGA8 305 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 OR10V1Q8NGI7 309 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 OR10X1Q8NGY0 326 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 TFAP2CQ92754 450 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 ST6GALNAC6Q969X2 333 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 AKR1E2Q96JD6 320 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 OR4F4Q96R69 305 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 SELENOIQ9C0D9 397 aa14.03□□□□□ -0.16
HDDC3-205ENST00000559898 MYL12BO14950 172 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 MGMTP16455 207 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 ARHGDIBP52566 201 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 ZNF816Q0VGE8 651 aaPredicted RBP14.02□□□□□ -0.17
HDDC3-205ENST00000559898 GNMTQ14749 295 aa14.02□□□□□ -0.17
HDDC3-205ENST00000559898 FOXB2Q5VYV0 432 aa14.02□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms