RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SHDQ96IW2 340 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 GABRG3Q99928 467 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 CBLN4Q9NTU7 201 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 COA4Q9NYJ1 87 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 CACNG5Q9UF02 275 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 CTXN2P0C2S0 81 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 ZNF735P0CB33 412 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 ZNF708P17019 499 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 TMEM50BP56557 158 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 FZD5Q13467 585 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 SPATA46Q5T0L3 261 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 SAMD13Q5VXD3 122 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 SCGB1D4Q6XE38 83 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 OR1K1Q8NGR3 316 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 WFIKKN1Q96NZ8 548 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 TIMP4Q99727 224 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 LANCL2Q9NS86 450 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 PISDQ9UG56 409 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 LILRA5A6NI73 299 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 MS4A18H0YCH9 400 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 ADCYAP1P18509 176 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 F2RP25116 425 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 CEACAM16Q2WEN9 425 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 MS4A18Q3C1V0 323 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 TEX30Q5JUR7 227 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 NAGKQ9UJ70 344 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 ERRFI1Q9UJM3 462 aaPredicted RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 HDGFL3Q9Y3E1 203 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 CRYM-AS1A6NIL9 109 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 RRP8O43159 456 aaKnown RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 DNPH1O43598 174 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 NEURL1O76050 574 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 BCL3P20749 454 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 TNFSF4P23510 183 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 PNRC1Q12796 327 aaPredicted RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 EDDM3AQ14507 147 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 RPEL1Q2QD12 228 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 RTN4RL2Q86UN3 420 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 SPACA9Q96E40 222 aaPredicted RBP6.22□□□□□ -1.41
USP3-210ENST00000559192 MAP1LC3CQ9BXW4 147 aa6.22□□□□□ -1.41
USP3-210ENST00000559192 MYO7AQ13402 2215 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 IGKV1D-43A0A0B4J1Z2 117 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 A0A1W2PQF6 199 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 PDCD6O75340 191 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 HRASP01112 189 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 KRASP01116 189 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 PPYP01298 95 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 GAPDHP04406 335 aaKnown RBP6.21□□□□□ -1.41
USP3-210ENST00000559192 ZNF32P17041 273 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 HTR1DP28221 377 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 G6PCP35575 357 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 SLC38A11Q08AI6 406 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 C16orf82Q7Z2V1 217 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 RABEPKQ7Z6M1 372 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 VASH2Q86V25 355 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 MYPOPQ86VE0 399 aaPredicted RBP6.21□□□□□ -1.41
USP3-210ENST00000559192 FAM169BQ8N8A8 192 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 SLC35E1Q96K37 410 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 RTBDNQ9BSG5 229 aaPredicted RBP6.21□□□□□ -1.41
USP3-210ENST00000559192 CCL28Q9NRJ3 127 aa6.21□□□□□ -1.41
USP3-210ENST00000559192 AURKAIP1Q9NWT8 199 aaPredicted RBP6.21□□□□□ -1.41
USP3-210ENST00000559192 H0YIZ8 118 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 PITX3O75364 302 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 VAMP5O95183 116 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 CA2P00918 260 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 FCGR3AP08637 254 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 DANCRP0C864 163 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 PGA3P0DJD8 388 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 Q56UQ5 140 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 ABHD17BQ5VST6 288 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 OR6X1Q8NH79 312 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 NAT6Q93015 286 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 KCNK17Q96T54 332 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 DOK5Q9P104 306 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 NPIPB9F8W1W9 429 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 CER1O95813 267 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 NUDT3O95989 172 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 CYB5R3P00387 301 aaPredicted RBP6.21□□□□□ -1.42
USP3-210ENST00000559192 OR5G3P0C626 314 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 PGA4P0DJD7 388 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 PGA5P0DJD9 388 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 TCTAP57738 103 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 DMWDQ09019 674 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 BSXQ3C1V8 233 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 PRAMEF5Q5TYX0 476 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 PRAMEF6Q5VXH4 476 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 WDR25Q64LD2 544 aaPredicted RBP6.21□□□□□ -1.42
USP3-210ENST00000559192 FBXO46Q6PJ61 603 aaPredicted RBP6.21□□□□□ -1.42
USP3-210ENST00000559192 AP5S1Q9NUS5 200 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 CDX1P47902 265 aaPredicted RBP6.21□□□□□ -1.42
USP3-210ENST00000559192 RND3P61587 244 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 SRSF9Q13242 221 aaKnown RBP eCLIP6.21□□□□□ -1.42
USP3-210ENST00000559192 FDX2Q6P4F2 183 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 PINX1Q96BK5 328 aaKnown RBP6.21□□□□□ -1.42
USP3-210ENST00000559192 SMIM8Q96KF7 97 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 FOXB1Q99853 325 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 NAT8Q9UHE5 227 aa6.21□□□□□ -1.42
USP3-210ENST00000559192 A0A1W2PN81 502 aa6.2□□□□□ -1.42
USP3-210ENST00000559192 MASP2O00187 686 aa6.2□□□□□ -1.42
USP3-210ENST00000559192 FGF16O43320 207 aa6.2□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.8 ms