RNA–Protein interactions for RNA: ENST00000556726.5

CCDC88C-211, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5

Gene CCDC88C, Length 3,617 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-211ENST00000556726 TRAV20A0A0B4J274 112 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 IGKV1D-13A0A0B4J2D9 117 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 IGKV1-13P0DP09 117 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 ERVS71-1P61550 626 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 HFEQ30201 348 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 C10orf128Q5T292 105 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF343Q6P1L6 599 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 NUFIP2Q7Z417 695 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 NANOS1Q8WY41 292 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 OR2J1Q9GZK6 312 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 FOXJ2Q9P0K8 574 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 NKX6-1P78426 367 aaPredicted RBP10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 OR8G1Q15617 311 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 TMEM251Q8N6I4 163 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 TMEM252Q8N6L7 170 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 MSL2Q9HCI7 577 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 GAB2Q9UQC2 676 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 SLC22A20A6NK97 555 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 YIF1AO95070 293 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 TGFBR3Q03167 851 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 TLE4Q04727 773 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 SSPNQ14714 243 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF429Q86V71 674 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 LHFPL1Q86WI0 220 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 LINC00518Q8N0U6 118 aa10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 SF3B5Q9BWJ5 86 aaKnown RBP10.45□□□□□ -0.74
CCDC88C-211ENST00000556726 KLRC4-KLRK1H3BQV0 150 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 OR3A1P47881 315 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 SRPXP78539 464 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 CCL20P78556 96 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 SLC25A53Q5H9E4 307 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF573Q86YE8 665 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 FAM89BQ8N5H3 189 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 CYB561D1Q8N8Q1 229 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 FRZBQ92765 325 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 OPA3Q9H6K4 179 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 FRYQ5TBA9 3013 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 GTF3C1Q12789 2109 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 LILRA1O75019 489 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 SCAF4O95104 1147 aaKnown RBP10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 IGHEP01854 428 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 CD63P08962 238 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 MMP9P14780 707 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 P2RY1P47900 373 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 UBE2G2P60604 165 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 GNG3P63215 75 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 Q0VFX4 171 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF385CQ66K41 422 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF787Q6DD87 383 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 DMBX1Q8NFW5 382 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 MRGPRDQ8TDS7 321 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 LHX4Q969G2 390 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 ADGRG7Q96K78 797 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 TTTY12Q9BZ98 90 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 SLC25A22Q9H936 323 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 BARX1Q9HBU1 254 aaPredicted RBP10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 IGSF23A1L1A6 192 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 FAM157CP0CG43 387 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 HLA-GP17693 338 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 DTYMKP23919 212 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 H3F3AP84243 136 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 MDP1Q86V88 176 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 PARP11Q9NR21 331 aa10.44□□□□□ -0.74
CCDC88C-211ENST00000556726 LY6G6EA0A0G2JKS1 128 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 hCG_38984A0A1B0GV85 526 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 CLEC18AA5D8T8 446 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 RBFOX3A6NFN3 312 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 DBX1A6NMT0 343 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 GCH1P30793 250 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 MEOX2P50222 304 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 TBC1D28Q2M2D7 210 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 CLEC18CQ8NCF0 446 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 WBP1Q96G27 269 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 UNKLQ9H9P5 680 aaKnown RBP10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 MTCH1Q9NZJ7 389 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 CRIM1Q9NZV1 1036 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 CACFD1Q9UGQ2 172 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 U3KQA8 63 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 IL13RA2Q14627 380 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 USF2Q15853 346 aaPredicted RBP10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 DCAF10Q5QP82 559 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 EIF4E3Q8N5X7 224 aaKnown RBP10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 NTNG2Q96CW9 530 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 FREM2Q5SZK8 3169 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 TRDCB7Z8K6 153 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 RPL36A-HNRNPH2H7BZ11 118 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 IFNA10P01566 189 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 MOB3AQ96BX8 217 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 TAAR9Q96RI9 348 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF665Q9H7R5 613 aa10.43□□□□□ -0.74
CCDC88C-211ENST00000556726 TRBV23-1A0A0A0MS06 115 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 TRGV5A0A0B4J1U4 118 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF716A6NP11 495 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 ZNF705GA8MUZ8 300 aaPredicted RBP10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 AESQ08117 197 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 UBALD2Q8IYN6 164 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 PFDN5Q99471 154 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 TM2D1Q9BX74 207 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 NUDT19A8MXV4 375 aa10.42□□□□□ -0.74
CCDC88C-211ENST00000556726 PRSS44E7EML9 344 aa10.42□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms