RNA–Protein interactions for RNA: ENST00000554872.5

CCDC88C-209, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 4

Gene CCDC88C, Length 1,165 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-209ENST00000554872 ACSM3Q53FZ2 586 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 AWAT2Q6E213 333 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 THNSL2Q86YJ6 484 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 MRGPRDQ8TDS7 321 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 Q96M66 194 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 OR5M11Q96RB7 305 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 ING3Q9NXR8 418 aa12.86□□□□□ -0.35
CCDC88C-209ENST00000554872 A0A1W2PPK0 400 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 FAM90A9PA6NNJ1 464 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 OR2F2O95006 317 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 MT-ND4P03905 459 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 MAS1P04201 325 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 MGMTP16455 207 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 JUNBP17275 347 aaPredicted RBP12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 NFYBP25208 207 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 SSTR5P35346 364 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 MNDAP41218 407 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 GP2P55259 537 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 TPBGQ13641 420 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 C1orf100Q5SVJ3 147 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 ZNF554Q86TJ5 538 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 LINC00311Q8N616 119 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 RBM14Q96PK6 669 aaKnown RBP12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 RAB9BQ9NP90 201 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 PSG11Q9UQ72 335 aa12.85□□□□□ -0.35
CCDC88C-209ENST00000554872 FAM172BPA6NC97 362 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 MCRIP1C9JLW8 97 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 M0QZK8 103 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 UCHL1P09936 223 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 CRHBPP24387 322 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 PSMA1P25786 263 aaKnown RBP12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 RAB7AP51149 207 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 MADCAM1Q13477 382 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 HABP2Q14520 560 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 TRAM1Q15629 374 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 UTF1Q5T230 341 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 TRAT1Q6PIZ9 186 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 PRSS48Q7RTY5 328 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 LRRTM1Q86UE6 522 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 OR8H3Q8N146 312 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 SGCDQ92629 289 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 UFD1Q92890 307 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 RPEQ96AT9 228 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 CST11Q9H112 138 aa12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 TET2Q6N021 2002 aaPredicted RBP12.84□□□□□ -0.35
CCDC88C-209ENST00000554872 A0A1W2PPI3 338 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 RGS10O43665 173 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 TSPAN15O95858 294 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 FUT3P21217 361 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 LOXL3P58215 753 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 MLLT11Q13015 90 aaPredicted RBP12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 MED22Q15528 200 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 ATAD3CQ5T2N8 411 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 RAB12Q6IQ22 244 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 TMEM104Q8NE00 496 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 TOMM40LQ969M1 308 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 OCSTAMPQ9BR26 566 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 TMED9Q9BVK6 235 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 MBNL3Q9NUK0 354 aaKnown RBP12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 NOTCH1P46531 2555 aa12.83□□□□□ -0.36
CCDC88C-209ENST00000554872 AIPO00170 330 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 SLC22A1O15245 554 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 PDCD6O75340 191 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 CSF1P09603 554 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 SRMP19623 302 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 ZNF137PP52743 207 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 BLCAPP62952 87 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 ZNF816Q0VGE8 651 aaPredicted RBP12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 INSL4Q14641 139 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 HSD17B12Q53GQ0 312 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 C6orf183Q5T699 404 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 FAM27D1Q5T7N8 215 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 GLT8D1Q68CQ7 371 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 SIGIRRQ6IA17 410 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 IZUMO2Q6UXV1 221 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 ARL11Q969Q4 196 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 SLC25A33Q9BSK2 321 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 SELENOIQ9C0D9 397 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 GFOD1Q9NXC2 390 aa12.82□□□□□ -0.36
CCDC88C-209ENST00000554872 CMYA5Q8N3K9 4069 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 FBXO24O75426 580 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 CRTAPO75718 401 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 AMY1AP04745 511 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 AMY2AP04746 511 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 FAM106CPP0CH98 169 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 VSIG10L2P0DP72 767 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 CPEP16870 476 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 VDAC2P45880 294 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 TBCEQ15813 527 aaPredicted RBP12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 RBM48Q5RL73 367 aaKnown RBP12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 LIPKQ5VXJ0 399 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 STEAP3Q658P3 488 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 RFESDQ8TAC1 157 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 NEK7Q8TDX7 302 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 CAPSLQ8WWF8 208 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 TM2D1Q9BX74 207 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 BANF2Q9H503 90 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 ETAA1Q9NY74 926 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 BLOC1S6Q9UL45 172 aa12.81□□□□□ -0.36
CCDC88C-209ENST00000554872 RAB26Q9ULW5 256 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms