RNA–Protein interactions for RNA: ENST00000554165.1

CCDC88C-208, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 420 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-208ENST00000554165 THRSPQ92748 146 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 RBMXL1Q96E39 390 aaKnown RBP9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 NCOR1P1Q9H4R4 102 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 LINC00574Q9H8X3 128 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 PCDHB16Q9NRJ7 776 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 ETAA1Q9NY74 926 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 DPM3Q9P2X0 92 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 BLOC1S6Q9UL45 172 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 PSG11Q9UQ72 335 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 TCF19Q9Y242 345 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 RNF114Q9Y508 228 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 MINOS1-NBL1R4GNA1 71 aa9.32□□□□□ -0.92
CCDC88C-208ENST00000554165 A0A087X0M5 115 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 A0A0A6YYD4 124 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 IGHV3-43A0A0B4J1X8 118 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 A0A1B0GX30 115 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 MCRIP1C9JLW8 97 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 LY6LH3BQJ8 138 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 BUB1B-PAK6H3BSN5 160 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 TOR1AO14656 332 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 SLC22A1O15245 554 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 TSPAN9O75954 239 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 IGHV3-43DP0DP04 118 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 RCC1P18754 421 aaPredicted RBP9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 FUT3P21217 361 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 HTR2CP28335 458 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 GABRA5P31644 462 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 KCNJ3P48549 501 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 GNG10P50151 68 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 GABARAPL2P60520 117 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 RPL15P61313 204 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 NKAPLQ5M9Q1 402 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 GLT8D1Q68CQ7 371 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 OR52W1Q6IF63 320 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 Q6ZS46 218 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 ARL11Q969Q4 196 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 MRPS24Q96EL2 167 aaKnown RBP9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 C16orf95Q9H693 158 aa9.31□□□□□ -0.92
CCDC88C-208ENST00000554165 TMEM14DPA8MWL7 114 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 C12orf77C9JDV5 145 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 J3QR06 171 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 AIPO00170 330 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 F2RL2O00254 374 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 PDCD6O75340 191 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 OR10A3P58181 314 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 RPS27AP62979 156 aaKnown RBP9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 TPTE2P1Q5T6R2 138 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 SYT6Q5T7P8 510 aaPredicted RBP9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 C6orf201Q7Z4U5 140 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 OR9G1Q8NH87 305 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 OR1L1Q8NH94 360 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 ZNF596Q8TC21 504 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 SULT4A1Q9BR01 284 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 FAAP24Q9BTP7 215 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 Q9H521 79 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 PLGRKTQ9HBL7 147 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 ABCB10Q9NRK6 738 aa9.3□□□□□ -0.92
CCDC88C-208ENST00000554165 A0A0B4J203 849 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 A0A1B0GUS0 222 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 SMIM30A4D0T7 59 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A22PA8MWA6 464 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 LEUTXA8MZ59 168 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 SLC17A2O00624 439 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 SLC31A2O15432 143 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 SOCS1O15524 211 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 ARL6IP5O75915 188 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 GZMHP20718 246 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 PSMB9P28065 219 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 CHATP28329 748 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 DYNLT3P51808 116 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 PRRX1P54821 245 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 LOXL3P58215 753 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 BLCAPP62952 87 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 TRAM1Q15629 374 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 HES5Q5TA89 166 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 UBE2UQ5VVX9 321 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 Q6ZPA2 131 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 NR2C2APQ86WQ0 139 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 GAPTQ8N292 157 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 PRR18Q8N4B5 295 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 OR51D1Q8NGF3 324 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 OR6M1Q8NGM8 313 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 CITED1Q99966 193 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 TMEM59Q9BXS4 323 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 CST11Q9H112 138 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 MMP28Q9H239 520 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 ZNF702PQ9H963 129 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 SPACA1Q9HBV2 294 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 NDUFB11Q9NX14 153 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 GHRLQ9UBU3 117 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 TRAPPC2LQ9UL33 140 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 LRRC42Q9Y546 428 aa9.29□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A10PA6NDY2 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A18PA6NE21 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A16PA6NEW6 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A20PA6NIJ5 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A7PA6NKC0 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 SH2D7A6NKC9 451 aaPredicted RBP9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A12PA8MX19 464 aa9.28□□□□□ -0.92
CCDC88C-208ENST00000554165 FAM90A5PA8MXJ8 464 aa9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54 ms