RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 FAM90A20PA6NIJ5 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A7PA6NKC0 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A12PA8MX19 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A5PA8MXJ8 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A23PA8MXZ1 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 C15orf65H3BRN8 121 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 TOR1AO14656 332 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 IGHV3-7P01780 117 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 UCHL1P09936 223 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A15PP0C7V4 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A13PP0C7W8 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A14PP0C7W9 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A24PP0C7X0 464 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 MGMTP16455 207 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 SRMP19623 302 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 GZMHP20718 246 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 NFYBP25208 207 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 MAP2K4P45985 399 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 PRRX1P54821 245 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 FBLN7Q53RD9 439 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 C1orf100Q5SVJ3 147 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 TPTE2P1Q5T6R2 138 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 SIGIRRQ6IA17 410 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 Q6ZS46 218 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 SLC16A12Q6ZSM3 486 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 GAPTQ8N292 157 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 OR10A7Q8NGE5 316 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 OR9G1Q8NH87 305 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 UFD1Q92890 307 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 LEAP2Q969E1 77 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 TMEM203Q969S6 136 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 CNBD2Q96M20 576 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 Q96M66 194 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 SELENOIQ9C0D9 397 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 MMP28Q9H239 520 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 SPACA1Q9HBV2 294 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 TCF7L1Q9HCS4 588 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 SERTAD4Q9NUC0 356 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 GHRLQ9UBU3 117 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 PITPNC1Q9UKF7 332 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 PSG11Q9UQ72 335 aa8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 PRKDCP78527 4128 aaKnown RBP8.24□□□□□ -1.09
CCDC88C-206ENST00000553437 OOSP1A8MZH6 123 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 J3QR06 171 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 F2RL2O00254 374 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 VSIG8P0DPA2 414 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 CPEP16870 476 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 CD24P25063 80 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 LOXL3P58215 753 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 RPS25P62851 125 aaKnown RBP8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 BLCAPP62952 87 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 MLLT11Q13015 90 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 HABP2Q14520 560 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 LTC4SQ16873 150 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 HSD17B12Q53GQ0 312 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 RBM48Q5RL73 367 aaKnown RBP8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 RAB12Q6IQ22 244 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM53AQ6NSI3 398 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 C11orf88Q6PI97 169 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 OR2T6Q8NHC8 308 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 WIPF2Q8TF74 440 aaPredicted RBP8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 CCDC107Q8WV48 283 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 CFHR4Q92496 578 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 CREB3L1Q96BA8 519 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 GFI1Q99684 422 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 CCDC90BQ9GZT6 254 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 NDUFA13Q9P0J0 144 aa8.23□□□□□ -1.09
CCDC88C-206ENST00000553437 DSCAML1Q8TD84 2053 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM90A9PA6NNJ1 464 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 MCRIP1C9JLW8 97 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 M0QZ24 198 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 TIMM23O14925 209 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 SLC22A1O15245 554 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 ORC5O43913 435 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 CRTAPO75718 401 aaPredicted RBP8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 GLAP06280 429 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 UBBP0CG47 229 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 HSMCR30P0CW71 290 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 FUT3P21217 361 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 BRS3P32247 399 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 CEACAM3P40198 252 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 QRFPP83859 136 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 DIAPH2-AS1Q14236 149 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 RBM39Q14498 530 aaKnown RBP8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 HERPUD1Q15011 391 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 GLT8D1Q68CQ7 371 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 OR10K2Q6IF99 312 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 KLHDC1Q8N7A1 406 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 DTX3Q8N9I9 347 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 OR52M1Q8NGK5 317 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 UBALD1Q8TB05 177 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 NEK7Q8TDX7 302 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 ARL11Q969Q4 196 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 FAM46BQ96A09 425 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 TSC22D3Q99576 134 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 MGLLQ99685 303 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 WNT10AQ9GZT5 417 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 PEX16Q9Y5Y5 336 aa8.22□□□□□ -1.09
CCDC88C-206ENST00000553437 SMIM31A0A1B0GVY4 71 aa8.21□□□□□ -1.1
CCDC88C-206ENST00000553437 A0A1W2PPE3 182 aa8.21□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms