RNA–Protein interactions for RNA: ENST00000546820.5

PTCH1-213, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 864 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-213ENST00000546820 CDNFQ49AH0 187 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 PLAC9Q5JTB6 97 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 UBE2NLQ5JXB2 153 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 ZNF782Q6ZMW2 699 aaPredicted RBP11.27□□□□□ -0.61
PTCH1-213ENST00000546820 TCF23Q7RTU1 214 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 ZNF554Q86TJ5 538 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 DYRK2Q92630 601 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 TNFRSF14Q92956 283 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 ARL11Q969Q4 196 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 ABCG5Q9H222 651 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 TMEM133Q9H2Q1 129 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 LINC00574Q9H8X3 128 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 IDI2-AS1Q9NZ38 188 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 COMMD3Q9UBI1 195 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 AK3Q9UIJ7 227 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 DSCAML1Q8TD84 2053 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 KIAA2026Q5HYC2 2103 aa11.27□□□□□ -0.61
PTCH1-213ENST00000546820 SONP18583 2426 aaKnown RBP11.27□□□□□ -0.61
PTCH1-213ENST00000546820 MTORP42345 2549 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 A0A075B6Q4 140 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 IGHV3OR16-10A0A075B7F0 116 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 SMIM31A0A1B0GVY4 71 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 RNASEK-C17orf49H0YIS7 233 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 H3BMQ9 156 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 ZNF701M0R085 212 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-213ENST00000546820 HIST1H1DP16402 221 aaKnown RBP11.26□□□□□ -0.61
PTCH1-213ENST00000546820 GNB3P16520 340 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 HOXB4P17483 251 aaPredicted RBP11.26□□□□□ -0.61
PTCH1-213ENST00000546820 LGALS4P56470 323 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 PITPNAQ00169 270 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 ARFRP1Q13795 201 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 SPCS2Q15005 226 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 C17orf58Q2M2W7 97 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 TMEM30BQ3MIR4 351 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 MOGAT2Q3SYC2 334 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 RBMS3Q6XE24 437 aaKnown RBP11.26□□□□□ -0.61
PTCH1-213ENST00000546820 RTN4RL2Q86UN3 420 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 PDZD9Q8IXQ8 264 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 SAMD12Q8N8I0 201 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 RFESDQ8TAC1 157 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 OCEL1Q9H607 264 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 C12orf4Q9NQ89 552 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 MBNL3Q9NUK0 354 aaKnown RBP11.26□□□□□ -0.61
PTCH1-213ENST00000546820 ZNF69Q9UC07 566 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 RSL24D1Q9UHA3 163 aaKnown RBP11.26□□□□□ -0.61
PTCH1-213ENST00000546820 FAM96BQ9Y3D0 163 aa11.26□□□□□ -0.61
PTCH1-213ENST00000546820 TRBV6-6A0A0A6YYG2 114 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 TRAV39A0A0B4J263 110 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 NPIPB11E5RHQ5 1161 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 TOR1AO14656 332 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 NPFFO15130 113 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 NAPSAO96009 420 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 GSTP1P09211 210 aaKnown RBP11.25□□□□□ -0.61
PTCH1-213ENST00000546820 RCC1P18754 421 aaPredicted RBP11.25□□□□□ -0.61
PTCH1-213ENST00000546820 OMGP23515 440 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 NFYBP25208 207 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 PRRX1P54821 245 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 MIDNQ504T8 468 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 PRAMEF5Q5TYX0 476 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 C9orf139Q6ZV77 190 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 MOB1BQ7L9L4 216 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 ABHD12Q8N2K0 398 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 PNKDQ8N490 385 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 OR11H6Q8NGC7 330 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 OR52M1Q8NGK5 317 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 SETD6Q8TBK2 473 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 MRPL30Q8TCC3 161 aaKnown RBP11.25□□□□□ -0.61
PTCH1-213ENST00000546820 ZNF418Q8TF45 676 aaPredicted RBP11.25□□□□□ -0.61
PTCH1-213ENST00000546820 SUCNR1Q9BXA5 334 aa11.25□□□□□ -0.61
PTCH1-213ENST00000546820 ZMAT3Q9HA38 289 aaKnown RBP11.25□□□□□ -0.61
PTCH1-213ENST00000546820 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.25□□□□□ -0.61
PTCH1-213ENST00000546820 TRAV18A0A075B6X5 111 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 MFNGO00587 321 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 XRCC3O43542 346 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 MMP23AO75900 390 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 APOA1P02647 267 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 COX7A1P24310 79 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 SSTR5P35346 364 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 MNDAP41218 407 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 DLX1P56177 255 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 PRB3Q04118 309 aaPredicted RBP11.24□□□□□ -0.61
PTCH1-213ENST00000546820 KLRD1Q13241 179 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 PNLIPRP3Q17RR3 467 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 HACD4Q5VWC8 232 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 BRD3OSQ6XYD6 125 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 ZNF596Q8TC21 504 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 DYNC2LI1Q8TCX1 351 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 ZDHHC16Q969W1 377 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 GALMQ96C23 342 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 DGCR14Q96DF8 476 aaKnown RBP11.24□□□□□ -0.61
PTCH1-213ENST00000546820 SLC25A38Q96DW6 304 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 KIRREL1Q96J84 757 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 CLEC7AQ9BXN2 247 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 TAF9BQ9HBM6 251 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 CCDC59Q9P031 241 aaKnown RBP11.24□□□□□ -0.61
PTCH1-213ENST00000546820 KCNK7Q9Y2U2 307 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 NAV3Q8IVL0 2385 aa11.24□□□□□ -0.61
PTCH1-213ENST00000546820 NSD1Q96L73 2696 aaPredicted RBP11.23□□□□□ -0.61
PTCH1-213ENST00000546820 FN1P02751 2386 aaKnown RBP11.23□□□□□ -0.61
PTCH1-213ENST00000546820 A0A0A6YYJ9 748 aa11.23□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 39.2 ms