RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 VDAC1P21796 283 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 GABRA6Q16445 453 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 ALKBH6Q3KRA9 238 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 TMEM88Q6PEY1 159 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 SLC25A40Q8TBP6 338 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 IL22RA2Q969J5 263 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 ABHD14BQ96IU4 210 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 SH3BGRL3Q9H299 93 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 ERRFI1Q9UJM3 462 aaPredicted RBP15.29■□□□□ 0.04
VIM-209ENST00000544301 SPAARA0A1B0GVQ0 90 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 IGSF23A1L1A6 192 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 C9JQL5 133 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 SSSCA1O60232 199 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 SNAPINO95295 136 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 SFTA3P0C7M3 94 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 PVALBP20472 110 aaPredicted RBP15.29■□□□□ 0.04
VIM-209ENST00000544301 CD80P33681 288 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 GUSBP1Q15486 140 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 Q6ZT83 130 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 Q8IYB0 196 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 PLPPR1Q8TBJ4 325 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 MAGT1Q9H0U3 335 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 PARD6AQ9NPB6 346 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 ASCL3Q9NQ33 180 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 TREM2Q9NZC2 230 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 POLDIP2Q9Y2S7 368 aa15.29■□□□□ 0.04
VIM-209ENST00000544301 URB1O60287 2271 aaKnown RBP15.29■□□□□ 0.04
VIM-209ENST00000544301 FAM157AC9JC47 383 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 SIRPB1O00241 398 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 SLC33A1O00400 549 aaPredicted RBP15.28■□□□□ 0.04
VIM-209ENST00000544301 OR2H2O95918 312 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 RAC2P15153 192 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 F2RP25116 425 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 MDH2P40926 338 aaKnown RBP15.28■□□□□ 0.04
VIM-209ENST00000544301 NPBWR1P48145 328 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 ASCL1P50553 236 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 DVL1P1P54792 670 aaPredicted RBP15.28■□□□□ 0.04
VIM-209ENST00000544301 UCP2P55851 309 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 INO80CQ6PI98 192 aaPredicted RBP15.28■□□□□ 0.04
VIM-209ENST00000544301 HSD17B11Q8NBQ5 300 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 OR1A1Q9P1Q5 309 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 TRAV39A0A0B4J263 110 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 NPIPB11E5RHQ5 1161 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 GALR2O43603 387 aaPredicted RBP15.28■□□□□ 0.04
VIM-209ENST00000544301 TSPAN15O95858 294 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 PGA5P0DJD9 388 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 WT1P19544 449 aaPredicted RBP15.28■□□□□ 0.04
VIM-209ENST00000544301 S100GP29377 79 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 ID3Q02535 119 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 ZNF154Q13106 437 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 MIDNQ504T8 468 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 IGFL2Q6UWQ7 119 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 ZNF497Q6ZNH5 498 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 OR1J1Q8NGS3 322 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 IL1F10Q8WWZ1 152 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 PLEKHF2Q9H8W4 249 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 LYRM2Q9NU23 88 aaPredicted RBP15.28■□□□□ 0.04
VIM-209ENST00000544301 LUZP4Q9P127 313 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 CACFD1Q9UGQ2 172 aa15.28■□□□□ 0.04
VIM-209ENST00000544301 IQCF6A8MYZ5 107 aa15.27■□□□□ 0.04
VIM-209ENST00000544301 CDIPTO14735 213 aa15.27■□□□□ 0.04
VIM-209ENST00000544301 FHITP49789 147 aa15.27■□□□□ 0.04
VIM-209ENST00000544301 PSG7Q13046 419 aa15.27■□□□□ 0.04
VIM-209ENST00000544301 DHRS7BQ6IAN0 325 aaPredicted RBP15.27■□□□□ 0.04
VIM-209ENST00000544301 CBLN2Q8IUK8 224 aa15.27■□□□□ 0.04
VIM-209ENST00000544301 ATP6V1G2-DDX39BF2Z307 99 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 CAMLGP49069 296 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 RAB5CP51148 216 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 VAMP2P63027 116 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 ZNF616Q08AN1 781 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 FAM122CQ6P4D5 195 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 MOB1BQ7L9L4 216 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 CNEP1R1Q8N9A8 125 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 OR10V1Q8NGI7 309 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 CACNA1HO95180 2353 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 IGHV3-64DA0A0J9YX35 117 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 PROB1E7EW31 1015 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 H0YL77 283 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 AQP7O14520 342 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 PITX3O75364 302 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 C1QL1O75973 258 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 NXPH2O95156 264 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 TMEM50AO95807 157 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 H2AFB1P0C5Y9 115 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 SNCAP37840 140 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 MPV17P39210 176 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 CLINT1Q14677 625 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 ZNF146Q15072 292 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 TESK1Q15569 626 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 SHEQ5VZ18 495 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 TMEM252Q8N6L7 170 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 SLC25A31Q9H0C2 315 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 C19orf12Q9NSK7 152 aa15.26■□□□□ 0.03
VIM-209ENST00000544301 STRAPQ9Y3F4 350 aaKnown RBP15.26■□□□□ 0.03
VIM-209ENST00000544301 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP15.25■□□□□ 0.03
VIM-209ENST00000544301 SELEP16581 610 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 OMGP23515 440 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 KIR2DL2P43627 348 aaPredicted RBP15.25■□□□□ 0.03
VIM-209ENST00000544301 OR8G1Q15617 311 aa15.25■□□□□ 0.03
VIM-209ENST00000544301 ODF3L1Q8IXM7 274 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms