RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 DYRK2Q92630 601 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 NRIP2Q9BQI9 281 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 TLNRD1Q9H1K6 362 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 PARD6AQ9NPB6 346 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 PLSCR4Q9NRQ2 329 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 PPP1R14DQ9NXH3 145 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 PRR13Q9NZ81 148 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 CRIM1Q9NZV1 1036 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 FBXL17Q9UF56 701 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 STRAPQ9Y3F4 350 aaKnown RBP8.4□□□□□ -1.06
SS18-205ENST00000542420 OR2W1Q9Y3N9 320 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 WIPI2Q9Y4P8 454 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 SHANK1Q9Y566 2161 aa8.4□□□□□ -1.06
SS18-205ENST00000542420 TRAV24A0A0B4J272 114 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 TMEM218A2RU14 115 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 C1QTNF9BB2RNN3 333 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.4□□□□□ -1.07
SS18-205ENST00000542420 CCL2P13500 99 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 KITLGP21583 273 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 HOXC12P31275 282 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 PAX5Q02548 391 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 OR8G1Q15617 311 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 ZNF324BQ6AW86 544 aaPredicted RBP8.4□□□□□ -1.07
SS18-205ENST00000542420 PCSK4Q6UW60 755 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 BEND4Q6ZU67 534 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 TBC1D26Q86UD7 250 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 ZBTB34Q8NCN2 500 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 FDCSPQ8NFU4 85 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 PRR7Q8TB68 274 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 SLC25A31Q9H0C2 315 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 HES4Q9HCC6 221 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 FAM212BQ9NTI7 297 aaPredicted RBP8.4□□□□□ -1.07
SS18-205ENST00000542420 MBNL3Q9NUK0 354 aaKnown RBP8.4□□□□□ -1.07
SS18-205ENST00000542420 ASF1BQ9NVP2 202 aa8.4□□□□□ -1.07
SS18-205ENST00000542420 HEXAP06865 529 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 FOLR2P14207 255 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 LMO1P25800 156 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 CAV2P51636 162 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 F2RL1P55085 397 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 UCP2P55851 309 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 TMEM33P57088 247 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 BAXQ07812 192 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 RTP5Q14D33 572 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 HERPUD1Q15011 391 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 P2RY6Q15077 328 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 MST1LQ2TV78 715 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 PHLDA2Q53GA4 152 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 ATP1A1-AS1Q5TC04 95 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 ZNF318Q5VUA4 2279 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 OR2T2Q6IF00 324 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 ZNF497Q6ZNH5 498 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 TMPRSS7Q7RTY8 843 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 LYZL2Q7Z4W2 148 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 ZNF695Q8IW36 515 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 SELENOHQ8IZQ5 122 aaKnown RBP8.39□□□□□ -1.07
SS18-205ENST00000542420 SLC35G3Q8N808 338 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 KDF1Q8NAX2 398 aaPredicted RBP8.39□□□□□ -1.07
SS18-205ENST00000542420 OR8G5Q8NG78 346 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 NEK7Q8TDX7 302 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 TMED6Q8WW62 240 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 TP53RKQ96S44 253 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 SEC11CQ9BY50 192 aa8.39□□□□□ -1.07
SS18-205ENST00000542420 UBE2J1Q9Y385 318 aaPredicted RBP8.39□□□□□ -1.07
SS18-205ENST00000542420 LSM5Q9Y4Y9 91 aaKnown RBP8.39□□□□□ -1.07
SS18-205ENST00000542420 FAM221AA4D161 298 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 SH2D1BO14796 132 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 IGLV1-44P01699 117 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 SCTP09683 121 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 HMGN3Q15651 99 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 NMSQ5H8A3 153 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 OR2B11Q5JQS5 317 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 RPL7L1Q6DKI1 246 aaKnown RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 BTNL8Q6UX41 500 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 SVBPQ8N300 66 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 BHLHE23Q8NDY6 225 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 OR10J5Q8NHC4 309 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 LSM10Q969L4 123 aaKnown RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 TMEM68Q96MH6 324 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 A0A1B0GV90 55 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 MBD3L4A6NDZ8 208 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 MBD3L3A6NE82 208 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 MBD3L5A6NJ08 208 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 ZNF705EA8MWA4 302 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 NKX2-8O15522 239 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 PITX3O75364 302 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 S100A9P06702 114 aaKnown RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 CA6P23280 308 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 KIR2DL2P43627 348 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 NKX2-1P43699 371 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 CCL11P51671 97 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 ZNF266Q14584 549 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 ACSF3Q4G176 576 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 ANKRD39Q53RE8 183 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 MBNL2Q5VZF2 373 aaKnown RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 BRICD5Q6PL45 260 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 TCTEX1D1Q8N7M0 179 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 SCCPDHQ8NBX0 429 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 MBD3L2Q8NHZ7 208 aaPredicted RBP8.38□□□□□ -1.07
SS18-205ENST00000542420 TRIB1Q96RU8 372 aa8.38□□□□□ -1.07
SS18-205ENST00000542420 CXXC4Q9H2H0 198 aa8.38□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms