RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 WIPI2Q9Y4P8 454 aa5.64□□□□□ -1.51
USP28-206ENST00000538224 CHD3Q12873 2000 aaKnown RBP5.64□□□□□ -1.51
USP28-206ENST00000538224 OR5H1A6NKK0 313 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 IFNL4K9M1U5 179 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 WRBO00258 174 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 SLC33A1O00400 549 aaPredicted RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 HS3ST1O14792 307 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 HSPA12AO43301 675 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 LILRA1O75019 489 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 PITX3O75364 302 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 MED6O75586 246 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 ATG12O94817 140 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 OR2H2O95918 312 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 HAND1O96004 215 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 SERPINE2P07093 398 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 CELA3BP08861 270 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 F2RP25116 425 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 NOVA1P51513 510 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 TMEM33P57088 247 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 RPS23P62266 143 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 PJVKQ0ZLH3 352 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 PSG7Q13046 419 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 HERPUD1Q15011 391 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 HMGN3Q15651 99 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 TUSC1Q2TAM9 212 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 SMIM21Q3B7S5 101 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 C1orf185Q5T7R7 199 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 RPL7L1Q6DKI1 246 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 SLC35E4Q6ICL7 350 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 VWA1Q6PCB0 445 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 PCSK4Q6UW60 755 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 ZNF600Q6ZNG1 722 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 ZNF818PQ6ZRF7 136 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 SSX8Q7RTT4 187 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 FAM90A1Q86YD7 464 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 SELENOHQ8IZQ5 122 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 BATF2Q8N1L9 274 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 SVBPQ8N300 66 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 OR2C3Q8N628 320 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 TCTEX1D1Q8N7M0 179 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 WDR31Q8NA23 367 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 ZBTB34Q8NCN2 500 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 LFNGQ8NES3 379 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 OR1S2Q8NGQ3 325 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 RDH5Q92781 318 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 NARS2Q96I59 477 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 USB1Q9BQ65 265 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 GINS3Q9BRX5 216 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 ARV1Q9H2C2 271 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 PLEKHF2Q9H8W4 249 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 SEBOXQ9HB31 216 aaPredicted RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 MBNL3Q9NUK0 354 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 LUZP4Q9P127 313 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 TRAPPC2LQ9UL33 140 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 RCL1Q9Y2P8 373 aaKnown RBP5.63□□□□□ -1.51
USP28-206ENST00000538224 DMDP11532 3685 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 WDFY4Q6ZS81 3184 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 MUC3AQ02505 3323 aa5.63□□□□□ -1.51
USP28-206ENST00000538224 IGHV2OR16-5A0A0B4J2B6 119 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 IGKV1D-13A0A0B4J2D9 117 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 IGKV1-6A0A0C4DH72 117 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 A0A1B0GU03 582 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 A0A1B0GWJ7 208 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 TMEM218A2RU14 115 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 OOEPA6NGQ2 149 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 TRIM77I1YAP6 450 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 SIRPB1O00241 398 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 HSD17B6O14756 317 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 RHBDL1O75783 438 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 TNFSF13O75888 250 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 SCAF4O95104 1147 aaKnown RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 APOC3P02656 99 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 CECR9P0C854 216 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 IGKV1-13P0DP09 117 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 WT1P19544 449 aaPredicted RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 LMO1P25800 156 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 CAV2P51636 162 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 PAX5Q02548 391 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 TCF15Q12870 199 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 SRSF6Q13247 344 aaKnown RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 KRTCAP3Q53RY4 240 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 NMSQ5H8A3 153 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 TIMM23BQ5SRD1 257 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 PXDC1Q5TGL8 231 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 ZNF324BQ6AW86 544 aaPredicted RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 Q6ZS92 163 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 WDR86Q86TI4 376 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 MYPOPQ86VE0 399 aaPredicted RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 CXorf67Q86X51 503 aaPredicted RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 BPIFCQ8NFQ6 507 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 OR52M1Q8NGK5 317 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 RNASE11Q8TAA1 199 aaKnown RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 LHFPL5Q8TAF8 219 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 PPP1R35Q8TAP8 253 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 IL1F10Q8WWZ1 152 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 LSM10Q969L4 123 aaKnown RBP5.62□□□□□ -1.51
USP28-206ENST00000538224 ZNF488Q96MN9 340 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 DMRTA2Q96SC8 542 aa5.62□□□□□ -1.51
USP28-206ENST00000538224 TSNAXQ99598 290 aaKnown RBP5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms