RNA–Protein interactions for RNA: ENST00000536218.5

LIG1-203, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,179 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-203ENST00000536218 EXT1Q16394 746 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 TSPO2Q5TGU0 170 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 GLIPR1L1Q6UWM5 242 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 LYZL2Q7Z4W2 148 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 CPAMD8Q8IZJ3 1885 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 TMEM217Q8N7C4 229 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 CLDND2Q8NHS1 167 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 RNF138Q8WVD3 245 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 MIEN1Q9BRT3 115 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 OSGIN2Q9Y236 505 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 A0A0A6YYD4 124 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 HIST1H1DP16402 221 aaKnown RBP12.08□□□□□ -0.48
LIG1-203ENST00000536218 GPR157Q5UAW9 335 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 CMTM1Q8IZ96 169 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 SLC22A24Q8N4F4 322 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 SUMF1Q8NBK3 374 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 OR52M1Q8NGK5 317 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 OR14L1PQ8NHC6 308 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 SLAMF6Q96DU3 332 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 RNF24Q9Y225 148 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 CACNA1HO95180 2353 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 FAM186AA6NE01 2351 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 IGHEP01854 428 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 CLDN17P56750 224 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 ENDOGQ14249 297 aaKnown RBP12.08□□□□□ -0.48
LIG1-203ENST00000536218 R4GMQ9 66 aa12.08□□□□□ -0.48
LIG1-203ENST00000536218 TNRC6BQ9UPQ9 1833 aaKnown RBP12.08□□□□□ -0.48
LIG1-203ENST00000536218 A8MXE2 369 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 BPNT1O95861 308 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 IGHG1P01857 330 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 DBHP09172 617 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 FDX2Q6P4F2 183 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 C16orf82Q7Z2V1 217 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 COMMD2Q86X83 199 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 ACY3Q96HD9 319 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 UCN2Q96RP3 112 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 ZNF2Q9BSG1 426 aaPredicted RBP12.07□□□□□ -0.48
LIG1-203ENST00000536218 LPAR5Q9H1C0 372 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 M0R296 226 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 ZNF93P35789 620 aaPredicted RBP12.07□□□□□ -0.48
LIG1-203ENST00000536218 EWSR1Q01844 656 aaKnown RBP eCLIP12.07□□□□□ -0.48
LIG1-203ENST00000536218 GNMTQ14749 295 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 MMDQ15546 238 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 KCNMB1Q16558 191 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 KLHL24Q6TFL4 600 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 Q6ZVH6 145 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 OR5B12Q96R08 314 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 P4HTMQ9NXG6 502 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 R4GN57 208 aa12.07□□□□□ -0.48
LIG1-203ENST00000536218 IGLV3-32A0A0A0MS00 114 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 ST8SIA3O43173 380 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 TRAF3IP2O43734 574 aaPredicted RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 GZMHP20718 246 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 SLC25A53Q5H9E4 307 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 COA6Q5JTJ3 125 aaKnown RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 YRDCQ86U90 279 aaKnown RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 LHFPL1Q86WI0 220 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 FADS6Q8N9I5 356 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 CALHM2Q9HA72 323 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 G6PC2Q9NQR9 355 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 RNF150Q9ULK6 438 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 PRRC2CQ9Y520 2896 aaKnown RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 A0A0G2JMM0 328 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 A0A1W2PPB8 328 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 A0A1W2PRS3 328 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 CEACAM18A8MTB9 384 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 KIR3DP1A8MWS1 328 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 RER1O15258 196 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 CST7O76096 145 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 SOX8P57073 446 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 FAM90A2PQ658T7 463 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 TMEM256Q8N2U0 113 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 CIB3Q96Q77 187 aaPredicted RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 GPER1Q99527 375 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 MRPL13Q9BYD1 178 aaKnown RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 PROK2Q9HC23 129 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 MSL2Q9HCI7 577 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 TCFL5Q9UL49 500 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 TMEM50BP56557 158 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 HIST1H3AP68431 136 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 PNRC1Q12796 327 aaPredicted RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 ZNF266Q14584 549 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 LCN15Q6UWW0 184 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 ADAT3Q96EY9 351 aaPredicted RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 SLC35E1Q96K37 410 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 ALKBH7Q9BT30 221 aaPredicted RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 TMEM59Q9BXS4 323 aa12.06□□□□□ -0.48
LIG1-203ENST00000536218 MRPS28Q9Y2Q9 187 aaKnown RBP12.06□□□□□ -0.48
LIG1-203ENST00000536218 MAP1BP46821 2468 aaKnown RBP12.05□□□□□ -0.48
LIG1-203ENST00000536218 HSPB2A8KAH6 182 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 ETV2O00321 342 aaPredicted RBP12.05□□□□□ -0.48
LIG1-203ENST00000536218 SP9P0CG40 484 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 GALR1P47211 349 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 QRFPP83859 136 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 HSPB2Q16082 182 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 ADPRHL1Q8NDY3 354 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 OR10S1Q8NGN2 331 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 CT55Q8WUE5 264 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 OXGR1Q96P68 337 aa12.05□□□□□ -0.48
LIG1-203ENST00000536218 RHBDD3Q9Y3P4 386 aa12.05□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms