RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SESN1Q9Y6P5 492 aa12.25□□□□□ -0.45
CPSF1-208ENST00000532560 ODF3BA8MYP8 253 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 CRTAPO75718 401 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-208ENST00000532560 PAHP00439 452 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 PTBP1P26599 531 aaKnown RBP eCLIP12.24□□□□□ -0.45
CPSF1-208ENST00000532560 FGF9P31371 208 aaPredicted RBP12.24□□□□□ -0.45
CPSF1-208ENST00000532560 TGFBR1P36897 503 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 IER3P46695 156 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 TAF9Q16594 264 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 HEPN1Q6WQI6 88 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 BEND2Q8NDZ0 799 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 OR11H6Q8NGC7 330 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 OR6M1Q8NGM8 313 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 PLPPR1Q8TBJ4 325 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 SLC25A46Q96AG3 418 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 AJUBAQ96IF1 538 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 Q96M66 194 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 KCTD7Q96MP8 289 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 ABCB10Q9NRK6 738 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 ING3Q9NXR8 418 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 KIF25Q9UIL4 384 aa12.24□□□□□ -0.45
CPSF1-208ENST00000532560 MEIKINA0A087WXM9 373 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 TRDV1A0A1B0GX56 115 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 TMEM89A2RUT3 159 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 ZNF729A6NN14 1252 aaPredicted RBP12.23□□□□□ -0.45
CPSF1-208ENST00000532560 IGHV4-59P01825 116 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 HTR2CP28335 458 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 GLP1RP43220 463 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 ATAD3CQ5T2N8 411 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 STEAP3Q658P3 488 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 ZNF626Q68DY1 528 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 POC5Q8NA72 575 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 C17orf50Q8WW18 174 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 GFI1Q99684 422 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 SELENOIQ9C0D9 397 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 TMEM133Q9H2Q1 129 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 DPAGT1Q9H3H5 408 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 BANF2Q9H503 90 aa12.23□□□□□ -0.45
CPSF1-208ENST00000532560 PAIP2BQ9ULR5 123 aaKnown RBP12.23□□□□□ -0.45
CPSF1-208ENST00000532560 TBL2Q9Y4P3 447 aaKnown RBP12.23□□□□□ -0.45
CPSF1-208ENST00000532560 IGHV2-26A0A0B4J1V2 119 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 TMEM30CPA0ZSE6 113 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 H3BUI4 141 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 SLC17A2O00624 439 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 MMP23AO75900 390 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 BPNT1O95861 308 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 CGB3P0DN86 165 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 CGB7P0DN87 165 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 VSIG8P0DPA2 414 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 CDK2P24941 298 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 COMPP49747 757 aaPredicted RBP12.22□□□□□ -0.45
CPSF1-208ENST00000532560 LGALS4P56470 323 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 PRAMEF5Q5TYX0 476 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 SLC35E4Q6ICL7 350 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 OR52W1Q6IF63 320 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 OR13A1Q8NGR1 328 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 GCDHQ92947 438 aaPredicted RBP12.22□□□□□ -0.45
CPSF1-208ENST00000532560 FAM46BQ96A09 425 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 CLEC7AQ9BXN2 247 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 CHIAQ9BZP6 476 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 LINC00574Q9H8X3 128 aa12.22□□□□□ -0.45
CPSF1-208ENST00000532560 TXNL4BQ9NX01 149 aaKnown RBP12.22□□□□□ -0.45
CPSF1-208ENST00000532560 TRAV1-2A0A0B4J238 106 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 KBTBD11-OT1A0A1B0GTJ5 212 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 BOLA2-SMG1P6H3BVE0 249 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 MPIG6BO95866 241 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 ARG1P05089 322 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 GLAP06280 429 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 HKR1P10072 659 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 CD34P28906 385 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 TNFSF8P32971 234 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 RPS19P39019 145 aaKnown RBP12.21□□□□□ -0.45
CPSF1-208ENST00000532560 RPL15P61313 204 aaKnown RBP12.21□□□□□ -0.45
CPSF1-208ENST00000532560 QRFPP83859 136 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 AANATQ16613 207 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 C17orf58Q2M2W7 97 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 KIAA2026Q5HYC2 2103 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 RAB12Q6IQ22 244 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 CADM3Q8N126 398 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 GDPD1Q8N9F7 314 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 ZNF565Q8N9K5 539 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 OR5R1Q8NH85 324 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 KCNG3Q8TAE7 436 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 NEK7Q8TDX7 302 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 DYRK2Q92630 601 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 TMEM59Q9BXS4 323 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 MEGF9Q9H1U4 602 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 CALYQ9NYX4 217 aa12.21□□□□□ -0.45
CPSF1-208ENST00000532560 AK6Q9Y3D8 172 aaKnown RBP12.21□□□□□ -0.45
CPSF1-208ENST00000532560 STAB1Q9NY15 2570 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 A0A087X0M5 115 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 A0A1B0GX30 115 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 BTBD17A6NE02 478 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 TMEM14DPA8MWL7 114 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 MCRIP1C9JLW8 97 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 PDCD6O75340 191 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 FUT3P21217 361 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 MYL9P24844 172 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 CFPP27918 469 aa12.2□□□□□ -0.46
CPSF1-208ENST00000532560 GDNFP39905 211 aa12.2□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms