RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 SCP2D1Q9UJQ7 156 aa5.07□□□□□ -1.6
LSM1-202ENST00000520286 GPR179Q6PRD1 2367 aa5.07□□□□□ -1.6
LSM1-202ENST00000520286 CEP250Q9BV73 2442 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 OTOGLQ3ZCN5 2332 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 MCM3APO60318 1980 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 USP24Q9UPU5 2620 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 GREB1Q4ZG55 1949 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 A0A1W2PQL4 384 aaPredicted RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 KCNK1O00180 336 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 MPZL2O60487 215 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 EIF1BO60739 113 aaKnown RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 SCN2BO60939 215 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 FABP3P05413 133 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 FABP1P07148 127 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 ZDHHC11BP0C7U3 371 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 F2RP25116 425 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 HOXA6P31267 233 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 SDC2P34741 201 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 RFC3P40938 356 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 EIF1P41567 113 aaKnown RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 RPL35P42766 123 aaKnown RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 EVX1P49640 407 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 CDKN2DP55273 166 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 WNT4P56705 351 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 MLLT11Q13015 90 aaPredicted RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 OR4D1Q15615 310 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 ELP2Q6IA86 826 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 H3F3CQ6NXT2 135 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 ERICH5Q6P6B1 374 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 C5orf46Q6UWT4 87 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 FAM92BQ6ZTR7 304 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 ABHD13Q7L211 337 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 SLC34A3Q8N130 599 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 C19orf18Q8NEA5 215 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 ATP6V1C2Q8NEY4 427 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 OR1M1Q8NGA1 313 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 OR5T3Q8NGG3 340 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 OR4A15Q8NGL6 344 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 OR10J6PQ8NGY7 276 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 LKAAEAR1Q8TD35 194 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 NAT6Q93015 286 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 RAD51AP1Q96B01 352 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 MRPS24Q96EL2 167 aaKnown RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 PPP3R2Q96LZ3 170 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 ZNF382Q96SR6 550 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 PDFQ9HBH1 243 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 ISYNA1Q9NPH2 558 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 IMP3Q9NV31 184 aaKnown RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 CLN6Q9NWW5 311 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 PCTPQ9UKL6 214 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 POFUT2Q9Y2G5 429 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 KCNE3Q9Y6H6 103 aa5.06□□□□□ -1.6
LSM1-202ENST00000520286 NYNRINQ9P2P1 1898 aaKnown RBP5.06□□□□□ -1.6
LSM1-202ENST00000520286 LOC285095A0A1B0GVY8 99 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 TSPAN11A1L157 253 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 H7C2Y5 167 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 M0R233 179 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 KPNA3O00505 521 aaPredicted RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 NDUFS6O75380 124 aaKnown RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 AQP8O94778 261 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 RAB3DO95716 219 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 DHFRP00374 187 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 MBP02144 154 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 S100A8P05109 93 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 IL6P05231 212 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 OR5H8P0DN80 308 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 UGT2B7P16662 529 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 ZNF17P17021 662 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 ZNF3P17036 446 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 ELK1P19419 428 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 WARSP23381 471 aaKnown RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 PSMA1P25786 263 aaKnown RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 SPAM1P38567 509 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 CSKP41240 450 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 CSNK1DP48730 415 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 PSMD4P55036 377 aaKnown RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 SLC7A9P82251 487 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 GPR176Q14439 515 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 TEX30Q5JUR7 227 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 CD200R1LQ6Q8B3 271 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 MRPL21Q7Z2W9 205 aaKnown RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 C10orf111Q8N326 155 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 Q8N402 240 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 NPWQ8N729 165 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 OR4S2Q8NH73 311 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 AP3S1Q92572 193 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 ERMAPQ96PL5 475 aaPredicted RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 MND1Q9BWT6 205 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 C1QTNF6Q9BXI9 259 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 DERL2Q9GZP9 239 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 REEP1Q9H902 201 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 TXNL4BQ9NX01 149 aaKnown RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 COPZ2Q9P299 210 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 SSR3Q9UNL2 185 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 YARS2Q9Y2Z4 477 aaKnown RBP5.05□□□□□ -1.6
LSM1-202ENST00000520286 NUBP2Q9Y5Y2 271 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 ADAMTS9Q9P2N4 1935 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 DMXL1Q9Y485 3027 aa5.05□□□□□ -1.6
LSM1-202ENST00000520286 FASNP49327 2511 aaKnown RBP5.04□□□□□ -1.6
LSM1-202ENST00000520286 DSPPQ9NZW4 1301 aa5.04□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms