RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 OR2J1Q9GZK6 312 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 SLC35B3Q9H1N7 401 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 SSUH2Q9Y2M2 353 aa10.19□□□□□ -0.78
SYNPO-204ENST00000519664 SLC31A2O15432 143 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 DEFA4P12838 97 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 FSTP19883 344 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 ARL3P36405 182 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 PLAC9Q5JTB6 97 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 NCR3LG1Q68D85 454 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 OR2M7Q8NG81 312 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 LRRC29Q8WV35 223 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 EDARADDQ8WWZ3 215 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 TECTBQ96PL2 329 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 COMMD5Q9GZQ3 224 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 NPDC1Q9NQX5 325 aaPredicted RBP10.18□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF71Q9NQZ8 489 aaPredicted RBP10.18□□□□□ -0.78
SYNPO-204ENST00000519664 MYLKQ15746 1914 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 C7orf77A4D0Y5 90 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 H0Y8G0 127 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 SPINK4O60575 86 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 ANKRD55Q3KP44 614 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 AWAT1Q58HT5 328 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 SLC25A47Q6Q0C1 308 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 OR13D1Q8NGV5 346 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF837Q96EG3 531 aaPredicted RBP10.18□□□□□ -0.78
SYNPO-204ENST00000519664 RSPO3Q9BXY4 272 aaPredicted RBP10.18□□□□□ -0.78
SYNPO-204ENST00000519664 GPR132Q9UNW8 380 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 DHRS7CA6NNS2 312 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 VDAC1P21796 283 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 DTYMKP23919 212 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 SLC38A11Q08AI6 406 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 IZUMO4Q1ZYL8 232 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 POC1BQ8TC44 478 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 ACY3Q96HD9 319 aa10.18□□□□□ -0.78
SYNPO-204ENST00000519664 SCTP09683 121 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 CTAG1AP78358 180 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 EGLN1Q9GZT9 426 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 WDR54Q9H977 334 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 TRGV8A0A0C4DH27 118 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 NKX6-3A6NJ46 265 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 M0QZK8 103 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 GGCTO75223 188 aaKnown RBP10.17□□□□□ -0.78
SYNPO-204ENST00000519664 APOA2P02652 100 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 FCGR3AP08637 254 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 LINC00271P0C7V0 271 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 DDTP30046 118 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 NPBWR1P48145 328 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 P2RY4P51582 365 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 HFEQ30201 348 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 DNASE2BQ8WZ79 361 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 RCC2Q9P258 522 aaKnown RBP10.17□□□□□ -0.78
SYNPO-204ENST00000519664 YIF1AO95070 293 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 RFPL3SP0C7P2 107 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 RANP62826 216 aaKnown RBP10.17□□□□□ -0.78
SYNPO-204ENST00000519664 EFNB1P98172 346 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 ATP1A1-AS1Q5TC04 95 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 C5orf66Q9H5L9 145 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 IGHV1-45A0A0A0MS14 117 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 MAP1LC3B2A6NCE7 125 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 LYPD3O95274 346 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 BTCP35070 178 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF90Q03938 601 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 UNC119Q13432 240 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 IL13RA2Q14627 380 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 SURF2Q15527 256 aaPredicted RBP10.17□□□□□ -0.78
SYNPO-204ENST00000519664 DHRS7BQ6IAN0 325 aaPredicted RBP10.17□□□□□ -0.78
SYNPO-204ENST00000519664 PRR27Q6MZM9 219 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 LINC00114Q6XXX2 140 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF439Q8NDP4 499 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 MAP1LC3BQ9GZQ8 125 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 GOLT1BQ9Y3E0 138 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 COL4A6Q14031 1691 aa10.17□□□□□ -0.78
SYNPO-204ENST00000519664 ISG15P05161 165 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 NPBWR2P48146 333 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 TEX30Q5JUR7 227 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 FFAR4Q5NUL3 377 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 ATRAIDQ6UW56 229 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 CCL17Q92583 94 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 PTX4Q96A99 478 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 AURKAIP1Q9NWT8 199 aaPredicted RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 METTL1Q9UBP6 276 aaKnown RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 SCN8AQ9UQD0 1980 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 A0A1W2PPE2 198 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 ZNF320A2RRD8 509 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 TRDCB7Z8K6 153 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 GALR2O43603 387 aaPredicted RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 SYNGR2O43760 224 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 RNF224P0DH78 156 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 RPL29P47914 159 aaKnown RBP10.16□□□□□ -0.78
SYNPO-204ENST00000519664 AESQ08117 197 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 FOXO1Q12778 655 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 CDCP2Q5VXM1 449 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 NSUN5P2Q63ZY6 315 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 DBX2Q6ZNG2 339 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 RHOVQ96L33 236 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 SRXN1Q9BYN0 137 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 IGKV3D-11A0A0A0MRZ8 115 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 OR5B21A6NL26 309 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 MFNGO00587 321 aa10.16□□□□□ -0.78
SYNPO-204ENST00000519664 TOX4O94842 621 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms