RNA–Protein interactions for RNA: ENST00000510187.5

SQSTM1-213, Transcript of sequestosome 1, humanhuman

TSL 5 BASIC

Gene SQSTM1, Length 1,714 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-213ENST00000510187 FAM76BQ5HYJ3 339 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 FBXW12Q6X9E4 464 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 SLC25A26Q70HW3 274 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 CALHM1Q8IU99 346 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 ZNF610Q8N9Z0 462 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 OR4D5Q8NGN0 318 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 KIRREL1Q96J84 757 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 VKORC1Q9BQB6 163 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 ADAT1Q9BUB4 502 aaKnown RBP13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 OPN3Q9H1Y3 402 aaPredicted RBP13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 OPA3Q9H6K4 179 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 Q9UFV3 132 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 MLXQ9UH92 298 aa13.69□□□□□ -0.22
SQSTM1-213ENST00000510187 DUXBA0A1W2PPF3 345 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 FAM221AA4D161 298 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 MPPED1O15442 326 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 PHF1O43189 567 aaPredicted RBP13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 DIRAS3O95661 229 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 IL18BPO95998 194 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 FGF12P61328 243 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 MRPL49Q13405 166 aaKnown RBP13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 MPV17LQ2QL34 196 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 Q6ZPA2 131 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 SPIN2AQ99865 258 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 SPIN2BQ9BPZ2 258 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 SMIM3Q9BZL3 60 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 EPG5Q9HCE0 2579 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 COL6A6A6NMZ7 2263 aa13.68□□□□□ -0.22
SQSTM1-213ENST00000510187 C3orf85A0A1B0GTC6 90 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 BMP5P22003 454 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 IGHV1-2P23083 117 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 TGFBR3Q03167 851 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 GNMTQ14749 295 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 BRICD5Q6PL45 260 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 DPPA2Q7Z7J5 298 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 OR56B2PQ8NGI1 322 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 TMEM56Q96MV1 263 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 PAPOLGQ9BWT3 736 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 TMEM56-RWDD3S4R434 201 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 SMG1Q96Q15 3661 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 TRDCB7Z8K6 153 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 TSPAN15O95858 294 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 NAPSAO96009 420 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 CTXN2P0C2S0 81 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 OR8U9P0C7N5 309 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 CD80P33681 288 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 PRDX4Q13162 271 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 PEA15Q15121 130 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 CEACAM21Q3KPI0 293 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 BEND4Q6ZU67 534 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 LINC00596Q86U02 117 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 ZDHHC23Q8IYP9 409 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 OR1K1Q8NGR3 316 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 OR11L1Q8NGX0 322 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 OR8U1Q8NH10 309 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 GTF3AQ92664 365 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 RND1Q92730 232 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 APOBEC3DQ96AK3 386 aaPredicted RBP13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 TMEM222Q9H0R3 208 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 C11orf1Q9H5F2 150 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 WFDC1Q9HC57 220 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 Q9N2K0 584 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 ZDHHC8Q9ULC8 765 aa13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 RCL1Q9Y2P8 373 aaKnown RBP13.67□□□□□ -0.22
SQSTM1-213ENST00000510187 POLEQ07864 2286 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 INTS1Q8N201 2190 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 KIR2DS1A0A191URI9 304 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 LYZL6O75951 148 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 TK1P04183 234 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 SNCAP37840 140 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 KIR2DS4P43632 304 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 NPBWR2P48146 333 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 KCNJ3P48549 501 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 KIR2DS1Q14954 304 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 MRPL21Q7Z2W9 205 aaKnown RBP13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 MKXQ8IYA7 352 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 SLC35G3Q8N808 338 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 DMBX1Q8NFW5 382 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 OR52M1Q8NGK5 317 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 TP53RKQ96S44 253 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 IGSF10Q6WRI0 2623 aa13.66□□□□□ -0.22
SQSTM1-213ENST00000510187 PIGBOS1A0A0B4J2F0 54 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 CCL21O00585 134 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 ZNF205O95201 554 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 F12P00748 615 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 COX5AP20674 150 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 BCL3P20749 454 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 LMO1P25800 156 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 ARR3P36575 388 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 HIKESHIQ53FT3 197 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 LINC00518Q8N0U6 118 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 HPSE2Q8WWQ2 592 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 RIMS4Q9H426 269 aaPredicted RBP13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 PLK3Q9H4B4 646 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 SMCO4Q9NRQ5 59 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 CACFD1Q9UGQ2 172 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 KALRNO60229 2985 aa13.65□□□□□ -0.22
SQSTM1-213ENST00000510187 CLEC18AA5D8T8 446 aa13.64□□□□□ -0.23
SQSTM1-213ENST00000510187 TUSC2O75896 110 aa13.64□□□□□ -0.23
SQSTM1-213ENST00000510187 FOLR2P14207 255 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms