RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 RTL10Q7L3V2 364 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 SIGLEC11Q96RL6 698 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 GHITMQ9H3K2 345 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 SEBOXQ9HB31 216 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 FBXL12Q9NXK8 326 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 CLDND1Q9NY35 253 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ST6GALNAC2Q9UJ37 374 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 V9GYH0 126 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 C3orf85A0A1B0GTC6 90 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 A0A1W2PQH9 124 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TCRBV7S3A2A0A539 114 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 IGLON5A6NGN9 336 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 UBE2L6O14933 153 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 RAMP1O60894 148 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 OR2A4O95047 310 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 HPXP02790 462 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 FCGR3AP08637 254 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 COL8A1P27658 744 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 PPP1CCP36873 323 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 GPR6P46095 362 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 HSPE1P61604 102 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 HOXC5Q00444 222 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ELAVL3Q14576 367 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 MRPL23Q16540 153 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 THSD4Q6ZMP0 1018 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 PAQR9Q6ZVX9 377 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TMEM144Q7Z5S9 345 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TBC1D26Q86UD7 250 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 C10orf111Q8N326 155 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 GBGT1Q8N5D6 347 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ZNF764Q96H86 408 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 MRGPRX3Q96LB0 322 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 OR2A7Q96R45 310 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 NMNAT3Q96T66 252 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 C1orf43Q9BWL3 253 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 MS4A5Q9H3V2 200 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 IL36BQ9NZH7 164 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 CXorf51AA0A1B0GTR3 108 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TCRBV5S4A2TA0A5A2 114 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TMEM238C9JI98 176 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 LINC01387J3KSC0 135 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ERVH48-1M5A8F1 160 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 DNASE2O00115 360 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 LANCL1O43813 399 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ARSAP15289 507 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 FUT3P21217 361 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 APOBEC1P41238 236 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 CRYBB2P43320 205 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 RPS11P62280 158 aaKnown RBP eCLIP3.16□□□□□ -1.9
USP53-205ENST00000509769 TIAL1Q01085 375 aaKnown RBP eCLIP3.16□□□□□ -1.9
USP53-205ENST00000509769 FABP5Q01469 135 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 CDKN3Q16667 212 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 TCTEX1D4Q5JR98 221 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 DACT2Q5SW24 774 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ZNF660Q6AZW8 331 aaPredicted RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 SLC35E4Q6ICL7 350 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ZNF880Q6PDB4 577 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 AGBL5Q8NDL9 886 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 OR8A1Q8NGG7 326 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 OR1N1Q8NGS0 311 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 ZNF502Q8TBZ5 544 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 RDH5Q92781 318 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 SNRNP40Q96DI7 357 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 FER1L6-AS2Q96M78 137 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 DEFB126Q9BYW3 111 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 CST9LQ9H4G1 147 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 RNF122Q9H9V4 155 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 CLEC5AQ9NY25 188 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 MRPL27Q9P0M9 148 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 NXT1Q9UKK6 140 aaKnown RBP3.16□□□□□ -1.9
USP53-205ENST00000509769 PRNDQ9UKY0 176 aa3.16□□□□□ -1.9
USP53-205ENST00000509769 A0A0G2JLL6 359 aaPredicted RBP3.15□□□□□ -1.9
USP53-205ENST00000509769 TMEM30CPA0ZSE6 113 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FITM1A5D6W6 292 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A10PA6NDY2 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A18PA6NE21 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A16PA6NEW6 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A20PA6NIJ5 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A8PA6NJQ4 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A7PA6NKC0 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A22PA8MWA6 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A12PA8MX19 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A5PA8MXJ8 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A23PA8MXZ1 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 ATOX1O00244 68 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 PLPP1O14494 284 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 SOCS6O14544 535 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 SIVA1O15304 175 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 PRSS23O95084 383 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 P04436 131 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A15PP0C7V4 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A13PP0C7W8 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A14PP0C7W9 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 FAM90A24PP0C7X0 464 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 DEFA4P12838 97 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 PCMT1P22061 227 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 SOX8P57073 446 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 HBBP68871 147 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 C19orf54Q5BKX5 351 aa3.15□□□□□ -1.9
USP53-205ENST00000509769 RPS26P11Q5JNZ5 115 aaPredicted RBP3.15□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms