RNA–Protein interactions for RNA: ENST00000494080.5

CCDC88B-209, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 4,563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-209ENST00000494080 B4DEV8 164 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNF737O75373 536 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 IFI6P09912 130 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 MMP9P14780 707 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 OR13G1Q8NGZ3 307 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 TGIF2-C20orf24A0A0A6YYL0 155 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 IGLV3-19P01714 112 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 SOX8P57073 446 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 REC114Q7Z4M0 266 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 PINX1Q96BK5 328 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 C5orf66Q9H5L9 145 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 SLC2A9Q9NRM0 540 aa14.23□□□□□ -0.13
CCDC88B-209ENST00000494080 IGLV1-36A0A0B4J1U3 117 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 MS4A18H0YCH9 400 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 HNRNPA3P51991 378 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 RPS16P62249 146 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 MS4A18Q3C1V0 323 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 VAX1Q5SQQ9 334 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNF343Q6P1L6 599 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 SF3B5Q9BWJ5 86 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 RALGAPA1Q6GYQ0 2036 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 PGA4P0DJD7 388 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 PGA5P0DJD9 388 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 RUNX1Q01196 453 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 ZNF154Q13106 437 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 RARRES2Q99969 163 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 DECR2Q9NUI1 292 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 KIAA1456Q9P272 454 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 PRSS50Q9UI38 385 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 H0Y8G0 127 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 APOA2P02652 100 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 SELEP16581 610 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 TSC2P49815 1807 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 FGF5P12034 268 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 FOXC1Q12948 553 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 APCDD1LQ8NCL9 501 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 OR4A16Q8NH70 328 aa14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 HDHD3Q9BSH5 251 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-209ENST00000494080 OR5I1Q13606 314 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 FAM78BQ5VT40 261 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 AQP3Q92482 292 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 ADGRG7Q96K78 797 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 SLC25A22Q9H936 323 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 NOTCH4Q99466 2003 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 C20orf202A1L168 122 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 DEDDO75618 318 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 FSTP19883 344 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 PTTG1IPP53801 180 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 TMEM183BQ1AE95 376 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 CACFD1Q9UGQ2 172 aa14.21□□□□□ -0.13
CCDC88B-209ENST00000494080 IGHV1-45A0A0A0MS14 117 aa14.21□□□□□ -0.14
CCDC88B-209ENST00000494080 CHST1O43916 411 aa14.21□□□□□ -0.14
CCDC88B-209ENST00000494080 BMP5P22003 454 aa14.21□□□□□ -0.14
CCDC88B-209ENST00000494080 KCNK17Q96T54 332 aa14.21□□□□□ -0.14
CCDC88B-209ENST00000494080 LPAR5Q9H1C0 372 aa14.21□□□□□ -0.14
CCDC88B-209ENST00000494080 Q9N2K0 584 aa14.21□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF391Q9UJN7 358 aa14.21□□□□□ -0.14
CCDC88B-209ENST00000494080 ZP4Q12836 540 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 NOL4LQ96MY1 436 aaPredicted RBP14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 NKX2-6A6NCS4 301 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 J3QRE1 110 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 ENSAO43768 121 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 PDCD6O75340 191 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 PMCHP20382 165 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 CTAG1AP78358 180 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 RBM14Q96PK6 669 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 MESP1Q9BRJ9 268 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 DCAF16Q9NXF7 216 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 CCKARP32238 428 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 C1orf100Q5SVJ3 147 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 OR2M7Q8NG81 312 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 OR4C5Q8NGB2 326 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 ATG101Q9BSB4 218 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 SMDT1Q9H4I9 107 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 NAT8Q9UHE5 227 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 C21orf140B9A014 251 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 AQP7O14520 342 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 TRGC1P0CF51 173 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 OR4A4PQ8NGN8 299 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 RFESDQ8TAC1 157 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 ELOVL1Q9BW60 279 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 GPR35Q9HC97 309 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 PLXNA3P51805 1871 aa14.2□□□□□ -0.14
CCDC88B-209ENST00000494080 B4E171 279 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 TSPAN7P41732 249 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 H2BFWTQ7Z2G1 175 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 SCCPDHQ8NBX0 429 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 MYOZ1Q9NP98 299 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF331Q9NQX6 463 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 TCF21O43680 179 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 MBPP02686 304 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 ZNF83P51522 516 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 ERGIC1Q969X5 290 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 SH3BGRL3Q9H299 93 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 SLC2A8Q9NY64 477 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 ATP23Q9Y6H3 246 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 LRP5LA4QPB2 252 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 KLHDC1Q8N7A1 406 aa14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 KDF1Q8NAX2 398 aaPredicted RBP14.19□□□□□ -0.14
CCDC88B-209ENST00000494080 TMEM38BQ9NVV0 291 aa14.19□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 58.6 ms