RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 IGHEP01854 428 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FTH1P19P0C7X4 201 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CLN3Q13286 438 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 STPG1Q5TH74 334 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF787Q6DD87 383 aa9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MRPL37Q9BZE1 423 aaKnown RBP9.37□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PTPRQQ9UMZ3 2332 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 VAMP5O95183 116 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 IGHV3-13P01766 116 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 IGHV3-7P01780 117 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TTRP02766 147 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SUCLG1P53597 346 aaKnown RBP9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SUMO3P55854 103 aaPredicted RBP9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF596Q8TC21 504 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 C22orf15Q8WYQ4 148 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MAGT1Q9H0U3 335 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PLK3Q9H4B4 646 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ADAMTS9Q9P2N4 1935 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GPM6AP51674 278 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 KISS1Q15726 138 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MRPL14Q6P1L8 145 aaKnown RBP9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HDHD3Q9BSH5 251 aaPredicted RBP9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ARV1Q9H2C2 271 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GTF3C1Q12789 2109 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TRGV5A0A0B4J1U4 118 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FHITP49789 147 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GFI1BQ5VTD9 330 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LINC00114Q6XXX2 140 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TMEM178AQ8NBL3 297 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SEBOXQ9HB31 216 aaPredicted RBP9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DEPPQ9NTK1 212 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF586Q9NXT0 402 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LHFPL6Q9Y693 200 aa9.36□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 BOD1L1Q8NFC6 3051 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LY6G6EA0A0G2JKS1 128 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 E9PQ18 207 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TRAF3IP2O43734 574 aaPredicted RBP9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 NRASP01111 189 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SEC11BP0C7V7 166 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FPR2P25090 351 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR10J1P30954 320 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PSMB3P49720 205 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 HERPUD1Q15011 391 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAM58AQ8N1B3 248 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FBXL14Q8N1E6 418 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 CYB561D1Q8N8Q1 229 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DEFB108BQ8NET1 73 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAM173AQ9BQD7 235 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FUT9Q9Y231 359 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OSGIN2Q9Y236 505 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 U3KQA8 63 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 C5orf63A6NC05 138 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 PINLYPA6NC86 204 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SLC22A20A6NK97 555 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FIGNL2A6NMB9 653 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ELLP55199 621 aaPredicted RBP9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RPS23P62266 143 aaKnown RBP9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RPS11P62280 158 aaKnown RBP eCLIP9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ENDOGQ14249 297 aaKnown RBP9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SAPCD1Q5SSQ6 148 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FNDC7Q5VTL7 733 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RNF144BQ7Z419 303 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SIGLECL1Q8N7X8 197 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF439Q8NDP4 499 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TP53RKQ96S44 253 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 KCNK17Q96T54 332 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAAP24Q9BTP7 215 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAM234AQ9H0X4 552 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SLC7A10Q9NS82 523 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 AQP7P3A6NL99 342 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 AGFG2O95081 481 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MBPP02686 304 aaPredicted RBP9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SERPINE2P07093 398 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SELEP16581 610 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SRD5A2P31213 254 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GALR1P47211 349 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TPPP2P59282 170 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 RAC3P60763 192 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 FAM3AP98173 230 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TLE1Q04724 770 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF684Q5T5D7 378 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DOK3Q7L591 496 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TMEM251Q8N6I4 163 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LHX4Q969G2 390 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 BORCS7Q96B45 105 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 TIMM10BQ9Y5J6 103 aa9.35□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 LOC102725191A0A1B0GVB3 256 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ANKRD30BLA7E2S9 258 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 DVL1O14640 695 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MMP9P14780 707 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GRB2P62993 217 aaKnown RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ARSJQ5FYB0 599 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR2M7Q8NG81 312 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 OR1P1Q8NH06 330 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 SDSLQ96GA7 329 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 GPHA2Q96T91 129 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZNF552Q9H707 407 aaPredicted RBP9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 ZDHHC11Q9H8X9 412 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 WDR54Q9H977 334 aa9.34□□□□□ -0.91
MSH5-SAPCD1-207ENST00000493662 MSL2Q9HCI7 577 aa9.34□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms