RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 WASF3Q9UPY6 502 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 NSG2Q9Y328 171 aa17.84■□□□□ 0.45
CCDC88B-208ENST00000492980 KRBOX1C9JBD0 128 aa17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 SCO1O75880 301 aa17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 HAND1O96004 215 aa17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 GCH1P30793 250 aa17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 EIF2S3LQ2VIR3 472 aaKnown RBP17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 ZFP57Q9NU63 452 aa17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 OR1A1Q9P1Q5 309 aa17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 NUP50Q9UKX7 468 aa17.83■□□□□ 0.45
CCDC88B-208ENST00000492980 ARID1AO14497 2285 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 NKX2-6A6NCS4 301 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 C1QTNF9BB2RNN3 333 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 CEBPDP49716 269 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 PRAMEF6Q5VXH4 476 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 FIP1L1Q6UN15 594 aaKnown RBP17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 ZNF695Q8IW36 515 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 CMTM1Q8IZ96 169 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 LILRB1Q8NHL6 650 aaPredicted RBP17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 IL1F10Q8WWZ1 152 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 MSL2Q9HCI7 577 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 FBXL17Q9UF56 701 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 TRAPPC2LQ9UL33 140 aa17.83■□□□□ 0.44
CCDC88B-208ENST00000492980 WNT9BO14905 357 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 CDS2O95674 445 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 UCP1P25874 307 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 C1orf174Q8IYL3 243 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 SPERTQ8NA61 448 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 RNF141Q8WVD5 230 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 MBNL3Q9NUK0 354 aaKnown RBP17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 OR14J1Q9UGF5 321 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 ERRFI1Q9UJM3 462 aaPredicted RBP17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 WIPI2Q9Y4P8 454 aa17.82■□□□□ 0.44
CCDC88B-208ENST00000492980 PGLYRP1O75594 196 aaPredicted RBP17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 FAM157CP0CG43 387 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 TIMP3P35625 211 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 TMEM33P57088 247 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 EIF5AP63241 154 aaKnown RBP17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 TUSC1Q2TAM9 212 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 OR1S2Q8NGQ3 325 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 ASF1BQ9NVP2 202 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 TAS2R3Q9NYW6 316 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 TAAR3PQ9P1P4 343 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 ZDHHC8Q9ULC8 765 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 A0A1B0GWJ7 208 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 H0Y980 276 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 ST8SIA3O43173 380 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 TNFSF12O43508 249 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 WDR82Q6UXN9 313 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 S100PBPQ96BU1 408 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 POMT1Q9Y6A1 747 aa17.81■□□□□ 0.44
CCDC88B-208ENST00000492980 A6NLC8 198 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 PSPNO60542 156 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 LMO1P25800 156 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 HOXA4Q00056 320 aaPredicted RBP17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 DMBX1Q8NFW5 382 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 OR10V1Q8NGI7 309 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 TAF9BQ9HBM6 251 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 RCL1Q9Y2P8 373 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 DUXBA0A1W2PPF3 345 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 GAPDHP04406 335 aaKnown RBP17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 ZNF83P51522 516 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 TESK1Q15569 626 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 HMGN3Q15651 99 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 KRTCAP3Q53RY4 240 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 TIMM23BQ5SRD1 257 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 ACP7Q6ZNF0 438 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 PRR18Q8N4B5 295 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 OR5D13Q8NGL4 314 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 ERGIC1Q969X5 290 aa17.8■□□□□ 0.44
CCDC88B-208ENST00000492980 MKRN2OSH3BPM6 223 aa17.79■□□□□ 0.44
CCDC88B-208ENST00000492980 GPR137BO60478 399 aa17.79■□□□□ 0.44
CCDC88B-208ENST00000492980 P2RY1P47900 373 aa17.79■□□□□ 0.44
CCDC88B-208ENST00000492980 FAM57AQ8TBR7 257 aa17.79■□□□□ 0.44
CCDC88B-208ENST00000492980 BSCL2Q96G97 398 aaPredicted RBP17.79■□□□□ 0.44
CCDC88B-208ENST00000492980 SMIM3Q9BZL3 60 aa17.79■□□□□ 0.44
CCDC88B-208ENST00000492980 UFSP2Q9NUQ7 469 aa17.79■□□□□ 0.44
CCDC88B-208ENST00000492980 F2RP25116 425 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 MSMPQ1L6U9 139 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 NMSQ5H8A3 153 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 STPG2Q8N412 459 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 UBALD1Q8TB05 177 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 IL22RA2Q969J5 263 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 SPIN2AQ99865 258 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 SPIN2BQ9BPZ2 258 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 PIGMQ9H3S5 423 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 GLS2Q9UI32 602 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 PROB1E7EW31 1015 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 ADAM20O43506 726 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 IGLV2-14P01704 120 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 S100GP29377 79 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 CEACAM8P31997 349 aaPredicted RBP17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 GPR157Q5UAW9 335 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 FAM180AQ6UWF9 173 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 CLEC9AQ6UXN8 241 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 MARC2Q969Z3 335 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 SFXN3Q9BWM7 321 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 C11orf1Q9H5F2 150 aa17.78■□□□□ 0.44
CCDC88B-208ENST00000492980 CLEC18AA5D8T8 446 aa17.77■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms