RNA–Protein interactions for RNA: ENST00000491233.1

COL6A3-211, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 3

Gene COL6A3, Length 652 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-211ENST00000491233 S100A13Q99584 98 aa10.8□□□□□ -0.68
COL6A3-211ENST00000491233 IFT22Q9H7X7 185 aa10.8□□□□□ -0.68
COL6A3-211ENST00000491233 ZNF281Q9Y2X9 895 aa10.8□□□□□ -0.68
COL6A3-211ENST00000491233 IGHV3-72A0A0B4J1Y9 119 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 IRGMA1A4Y4 181 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 MAGEA13PA6NCF6 341 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 SERPINE3A8MV23 424 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 C15orf65H3BRN8 121 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 OGG1O15527 345 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 DUS4LO95620 317 aaKnown RBP10.79□□□□□ -0.68
COL6A3-211ENST00000491233 MYL12AP19105 171 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 RPL23AP62750 156 aaKnown RBP10.79□□□□□ -0.68
COL6A3-211ENST00000491233 ZNF816Q0VGE8 651 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-211ENST00000491233 RIPK1Q13546 671 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 SLC22A6Q4U2R8 563 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 SLC35E3Q7Z769 313 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 ZFP41Q8N8Y5 198 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 OR51D1Q8NGF3 324 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 NEK7Q8TDX7 302 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 CHPT1Q8WUD6 406 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 CCDC107Q8WV48 283 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 ARL11Q969Q4 196 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 RDH12Q96NR8 316 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 ZNF184Q99676 751 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-211ENST00000491233 PAK1IP1Q9NWT1 392 aaPredicted RBP10.79□□□□□ -0.68
COL6A3-211ENST00000491233 CLEC2DQ9UHP7 191 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 LINC00527Q9UJ94 153 aa10.79□□□□□ -0.68
COL6A3-211ENST00000491233 DIMT1Q9UNQ2 313 aaKnown RBP10.79□□□□□ -0.68
COL6A3-211ENST00000491233 EXOSC1Q9Y3B2 195 aaKnown RBP10.79□□□□□ -0.68
COL6A3-211ENST00000491233 IGHV3-43A0A0B4J1X8 118 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 IGHV1-3A0A0C4DH29 117 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 TRBV5-5A0A0J9YX44 114 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 NUDT19A8MXV4 375 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 CCRL2O00421 344 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 SDCBPO00560 298 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-211ENST00000491233 ZNF780AO75290 641 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-211ENST00000491233 IGHV3-43DP0DP04 118 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 IGFBP3P17936 291 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-211ENST00000491233 HOXD3P31249 432 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-211ENST00000491233 FAM53AQ6NSI3 398 aaPredicted RBP10.78□□□□□ -0.68
COL6A3-211ENST00000491233 C18orf65Q6ZTR6 163 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 C8orf86Q6ZUL3 223 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 OR2W3Q7Z3T1 314 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 MOB3BQ86TA1 216 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 MRPL41Q8IXM3 137 aaKnown RBP10.78□□□□□ -0.68
COL6A3-211ENST00000491233 IZUMO1Q8IYV9 350 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 GFOD1Q9NXC2 390 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 BABAM2Q9NXR7 383 aa10.78□□□□□ -0.68
COL6A3-211ENST00000491233 TRAV8-7A0A075B6U6 113 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 WI2-2373I1.2A0A1W2PRP0 233 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 AIPO00170 330 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 IGHG2P01859 326 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 GAPDHP04406 335 aaKnown RBP10.77□□□□□ -0.69
COL6A3-211ENST00000491233 GTF2F2P13984 249 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 FSTP19883 344 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 GZMHP20718 246 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 THBS3P49746 956 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 KRTAP10-11P60412 298 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 SLC35B1P78383 322 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 EBI3Q14213 229 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 Q499Y3 187 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 DMKNQ6E0U4 476 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-211ENST00000491233 ZNF497Q6ZNH5 498 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 FOXRED2Q8IWF2 684 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 STPG2Q8N412 459 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 KLHL30-AS1Q8NEE0 82 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 OR52M1Q8NGK5 317 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 CYGBQ8WWM9 190 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 DPF1Q92782 380 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 GHSRQ92847 366 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 MUL1Q969V5 352 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 EAF1Q96JC9 268 aaPredicted RBP10.77□□□□□ -0.69
COL6A3-211ENST00000491233 CKLFQ9UBR5 152 aa10.77□□□□□ -0.69
COL6A3-211ENST00000491233 NCBP2LA6PVI3 153 aaKnown RBP10.76□□□□□ -0.69
COL6A3-211ENST00000491233 SLC31A2O15432 143 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 ORC5O43913 435 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 MT-ND4P03905 459 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 IL3RAP26951 378 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 RPS11P62280 158 aaKnown RBP eCLIP10.76□□□□□ -0.69
COL6A3-211ENST00000491233 MED21Q13503 144 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 LRRC36Q1X8D7 754 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 YIF1BQ5BJH7 314 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 STX19Q8N4C7 294 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 JAGN1Q8N5M9 183 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 LINC00311Q8N616 119 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 Q8N6K4 173 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 C8orf31Q8N9H6 132 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 SETD9Q8NE22 299 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 TMEM80Q96HE8 168 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 PGLYRP3Q96LB9 341 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 OR14A2Q96R54 314 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 GPR61Q9BZJ8 451 aa10.76□□□□□ -0.69
COL6A3-211ENST00000491233 CHCHD3Q9NX63 227 aaKnown RBP10.76□□□□□ -0.69
COL6A3-211ENST00000491233 RCC2Q9P258 522 aaKnown RBP10.76□□□□□ -0.69
COL6A3-211ENST00000491233 MRPS28Q9Y2Q9 187 aaKnown RBP10.76□□□□□ -0.69
COL6A3-211ENST00000491233 TRBV5-7A0A0A0MS05 114 aa10.75□□□□□ -0.69
COL6A3-211ENST00000491233 PNMA8CA0A1B0GUJ8 204 aa10.75□□□□□ -0.69
COL6A3-211ENST00000491233 A0A1W2PPK0 400 aa10.75□□□□□ -0.69
COL6A3-211ENST00000491233 LINC01548A6NM66 108 aa10.75□□□□□ -0.69
COL6A3-211ENST00000491233 C12orf77C9JDV5 145 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms