RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 ARR3P36575 388 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 WNT5AP41221 380 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 RUNX1Q01196 453 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 IZUMO4Q1ZYL8 232 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 SPATA46Q5T0L3 261 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 ARRDC1-AS1Q9H2J1 176 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 TECTAO75443 2155 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 TRAV24A0A0B4J272 114 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 A0A0G2JRQ6 117 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 ARGFXA6NJG6 315 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 ANKRD30BLA7E2S9 258 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 RHBDL1O75783 438 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 CA6P23280 308 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 ZNF154Q13106 437 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 OR2T2Q6IF00 324 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 FAM24BQ8N5W8 94 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 OR51H1Q8NH63 302 aa15.31■□□□□ 0.04
VIM-206ENST00000487938 ERRFI1Q9UJM3 462 aaPredicted RBP15.31■□□□□ 0.04
VIM-206ENST00000487938 PUS1Q9Y606 427 aaKnown RBP eCLIP15.31■□□□□ 0.04
VIM-206ENST00000487938 hCG_1809904A0A1W2PP81 198 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 A0A1W2PPE2 198 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 A0A1W2PR64 198 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 A0A1W2PRV1 198 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 WRBO00258 174 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 CTXN2P0C2S0 81 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 CBR1P16152 277 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 MPLP40238 635 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 DBX2Q6ZNG2 339 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 MCEMP1Q8IX19 187 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 IL1F10Q8WWZ1 152 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 TAAR3PQ9P1P4 343 aa15.3■□□□□ 0.04
VIM-206ENST00000487938 PRSS44E7EML9 344 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 EIF3GO75821 320 aaKnown RBP eCLIP15.29■□□□□ 0.04
VIM-206ENST00000487938 MT-ND4LP03901 98 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 ZNF883P0CG24 379 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 PAX6P26367 422 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 SULT1A1P50225 295 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 CEBPGP53567 150 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 DCAF10Q5QP82 559 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 SPSB3Q6PJ21 355 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 FAM58AQ8N1B3 248 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 OR10J5Q8NHC4 309 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 TNRC6AQ8NDV7 1962 aaKnown RBP15.29■□□□□ 0.04
VIM-206ENST00000487938 ESPL1Q14674 2120 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 MED13Q9UHV7 2174 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 A0A1W2PPE3 182 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 CLEC18AA5D8T8 446 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 H3BP45 60 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 HSPA12AO43301 675 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 APLNRP35414 380 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 PAX9P55771 341 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 HAGHQ16775 308 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 ZNF324BQ6AW86 544 aaPredicted RBP15.29■□□□□ 0.04
VIM-206ENST00000487938 PRR18Q8N4B5 295 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 CLEC18CQ8NCF0 446 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 OR5D13Q8NGL4 314 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 DDA1Q9BW61 102 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 ABI3Q9P2A4 366 aa15.29■□□□□ 0.04
VIM-206ENST00000487938 RBFOX3A6NFN3 312 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 H0Y980 276 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 PSG2P11465 335 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 F2RP25116 425 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 MEOX2P50222 304 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 SOHLH1Q5JUK2 328 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 ZNF573Q86YE8 665 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 LFNGQ8NES3 379 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 UBALD1Q8TB05 177 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 GPR146Q96CH1 333 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 DLL3Q9NYJ7 618 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 OR1A1Q9P1Q5 309 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 OR2W1Q9Y3N9 320 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 LIPGQ9Y5X9 500 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 FAM186AA6NE01 2351 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 FBP1P09467 338 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 GNG3P63215 75 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 RNF212Q495C1 297 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 RNF115Q9Y4L5 304 aa15.28■□□□□ 0.04
VIM-206ENST00000487938 IGHV3-64DA0A0J9YX35 117 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 DEGS1O15121 323 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 IFNA4P05014 189 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 MEOX1P50221 254 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 EIF2S3LQ2VIR3 472 aaKnown RBP15.27■□□□□ 0.04
VIM-206ENST00000487938 ADAM5Q6NVV9 412 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 P4HA3Q7Z4N8 544 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 ZNF561Q8N587 486 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 KDF1Q8NAX2 398 aaPredicted RBP15.27■□□□□ 0.04
VIM-206ENST00000487938 DEFB127Q9H1M4 99 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 PLK3Q9H4B4 646 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 TUBA4BQ9H853 241 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 IL17BQ9UHF5 180 aa15.27■□□□□ 0.04
VIM-206ENST00000487938 KMT2EQ8IZD2 1858 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 DUXBA0A1W2PPF3 345 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 IL18BPO95998 194 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 S100A6P06703 90 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 CLN3Q13286 438 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 OR1J1Q8NGS3 322 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 ABHD14BQ96IU4 210 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 RIMS4Q9H426 269 aaPredicted RBP15.27■□□□□ 0.03
VIM-206ENST00000487938 MPC1Q9Y5U8 109 aa15.27■□□□□ 0.03
VIM-206ENST00000487938 A0A1B0GW64 132 aa15.26■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms