RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 HFEQ30201 348 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 COX19Q49B96 90 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 TMEM97Q5BJF2 176 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 ZBTB34Q8NCN2 500 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 IGHV5-10-1A0A0J9YXX1 117 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 PRRX1P54821 245 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 FSCN3Q9NQT6 498 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 RCC2Q9P258 522 aaKnown RBP14.37□□□□□ -0.11
COL7A1-210ENST00000487017 A0A087X0M5 115 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 A0A1B0GX30 115 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF716A6NP11 495 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 PDE6DO43924 150 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 ORM2P19652 201 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 VSTM2AQ8TAG5 236 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 SF3B6Q9Y3B4 125 aaKnown RBP14.37□□□□□ -0.11
COL7A1-210ENST00000487017 KCNAB3O43448 404 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 CA11O75493 328 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 PSG2P11465 335 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 CCL4P13236 92 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 CAMPP49913 170 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 PLPPR5Q32ZL2 321 aa14.37□□□□□ -0.11
COL7A1-210ENST00000487017 RGPD4Q7Z3J3 1758 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 GREM1O60565 184 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 FCGR3AP08637 254 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 RBM11P57052 281 aaKnown RBP14.36□□□□□ -0.11
COL7A1-210ENST00000487017 LYZP61626 148 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 DHRS11Q6UWP2 260 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 NRIP2Q9BQI9 281 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 BMI1P35226 326 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 IFITM2Q01629 132 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 PDPNQ86YL7 162 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 CA5BP1Q8WTZ4 195 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 SLC25A38Q96DW6 304 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 PLXNB2O15031 1838 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 ERVH48-1M5A8F1 160 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 PAGE4O60829 102 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 C3AR1Q16581 482 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF660Q6AZW8 331 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-210ENST00000487017 OR4P4Q8NGL7 312 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 MAFAQ8NHW3 353 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF385AQ96PM9 386 aaKnown RBP14.36□□□□□ -0.11
COL7A1-210ENST00000487017 AMMECR1Q9Y4X0 333 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-210ENST00000487017 A0A0U1RQV5 110 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 M0R143 59 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 GZMHP20718 246 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 SULT1A2P50226 295 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 SPEM2Q0P670 501 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 PSG5Q15238 335 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 SLC23A3Q6PIS1 610 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 BHLHA15Q7RTS1 189 aaPredicted RBP14.36□□□□□ -0.11
COL7A1-210ENST00000487017 WDR54Q9H977 334 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 TREM2Q9NZC2 230 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 TINAGQ9UJW2 476 aa14.36□□□□□ -0.11
COL7A1-210ENST00000487017 ATAD5Q96QE3 1844 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 IL11P20809 199 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 G6PCP35575 357 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 MESP2Q0VG99 397 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 UFC1Q9Y3C8 167 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 J3KRW8 73 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 IGHV4-34P06331 123 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 SMDT1Q9H4I9 107 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 RNF122Q9H9V4 155 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 OR5AC2Q9NZP5 309 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 COL4A5P29400 1685 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 CTXND1A0A1B0GTU2 59 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 K7ESF4 209 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 ROM1Q03395 351 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 HLA-DRB5Q30154 266 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 KHDC3LQ587J8 217 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 SFTPA2Q8IWL1 248 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 MIOXQ9UGB7 285 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 FUT9Q9Y231 359 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 A0A1B0GTQ1 180 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 F12P00748 615 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-210ENST00000487017 MUC1P15941 1255 aaPredicted RBP14.35□□□□□ -0.11
COL7A1-210ENST00000487017 SOX8P57073 446 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF880Q6PDB4 577 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF788Q6ZQV5 615 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 OR1B1Q8NGR6 318 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 ZNF253O75346 499 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 UPK3AO75631 287 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 CD40P25942 277 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 C1orf210Q8IVY1 113 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 OR1L6Q8NGR2 347 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 SSMEM1Q8WWF3 244 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 WASHC3Q9Y3C0 194 aa14.35□□□□□ -0.11
COL7A1-210ENST00000487017 LOC102724200A0A096LPH7 203 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-210ENST00000487017 GAPDHP04406 335 aaKnown RBP14.34□□□□□ -0.11
COL7A1-210ENST00000487017 CSN3P07498 182 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 ADAMTS17Q8TE56 1095 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 AMELYQ99218 206 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 M0R2Z0 102 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 DEDDO75618 318 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 HTN1P15515 57 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 SRP14P37108 136 aaKnown RBP14.34□□□□□ -0.11
COL7A1-210ENST00000487017 LRP11Q86VZ4 500 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 SP7Q8TDD2 431 aaPredicted RBP14.34□□□□□ -0.11
COL7A1-210ENST00000487017 POM121Q96HA1 1249 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 LPAR5Q9H1C0 372 aa14.34□□□□□ -0.11
COL7A1-210ENST00000487017 COL11A2P13942 1736 aaPredicted RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms