RNA–Protein interactions for RNA: ENST00000479177.1

USP48-208, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 686 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-208ENST00000479177 IGHV4-39P01824 125 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 GYPAP02724 150 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 FCGR3AP08637 254 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 CSF1P09603 554 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4L2P0CJ85 424 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4L3P0CJ86 424 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4L4P0CJ87 422 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4L5P0CJ88 424 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4L6P0CJ89 424 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4L7P0CJ90 424 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 PPIAL4FP0DN26 164 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 LYNX1P0DP58 116 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 SELLP14151 372 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DAOP14920 347 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DTYMKP23919 212 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 COL8A2P25067 703 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 SSTR2P30874 369 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 PRDX2P32119 198 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 MDH2P40926 338 aaKnown RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 CBX5P45973 191 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 KCNJ3P48549 501 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 EFNA4P52798 201 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 AP3S2P59780 193 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 BTG1P62324 171 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 PAX5Q02548 391 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 COL10A1Q03692 680 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 SCN1BQ07699 218 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DYRK1AQ13627 763 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 ATXN7L3Q14CW9 347 aaPredicted RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 ZMYND11Q15326 602 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 MICBQ29980 383 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 RSBN1Q5VWQ0 802 aaPredicted RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 ZNF57Q68EA5 555 aaPredicted RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 SFRP4Q6FHJ7 346 aaPredicted RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4L9Q6RFH8 374 aaPredicted RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 ZNF497Q6ZNH5 498 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 ZNF788Q6ZQV5 615 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 C17orf107Q6ZR85 190 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 HOGA1Q86XE5 327 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 GAPTQ8N292 157 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 BPIFB2Q8N4F0 458 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 TOMM5Q8N4H5 51 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 GVQW1Q8N7I0 195 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 FAM216BQ8N7L0 139 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 ASCC1Q8N9N2 400 aaKnown RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 DEFB108BQ8NET1 73 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 OR4S1Q8NGB4 309 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 OR5T2Q8NGG2 359 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 SETD6Q8TBK2 473 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 MRPL30Q8TCC3 161 aaKnown RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 NEK7Q8TDX7 302 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 SNAPC3Q92966 411 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 COQ2Q96H96 371 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 CMSS1Q9BQ75 279 aaKnown RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 CHST6Q9GZX3 395 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 C11orf54Q9H0W9 315 aaPredicted RBP5.53□□□□□ -1.52
USP48-208ENST00000479177 PPA2Q9H2U2 334 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 IFT46Q9NQC8 304 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 ETAA1Q9NY74 926 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 DUX4Q9UBX2 424 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 PPIAL4AQ9Y536 164 aa5.53□□□□□ -1.52
USP48-208ENST00000479177 LINC00854A0A1B0GVQ3 168 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 K7N7A8 449 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 TNFRSF13BO14836 293 aaPredicted RBP5.52□□□□□ -1.53
USP48-208ENST00000479177 LYRM1O43325 122 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 SSX4O60224 188 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 NDUFS7O75251 213 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 ECDO95905 644 aaPredicted RBP5.52□□□□□ -1.53
USP48-208ENST00000479177 PTTG1O95997 202 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 MT-ND4P03905 459 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 CD74P04233 296 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 CSN2P05814 226 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 FCER2P06734 321 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 GSTT2BP0CG30 244 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 TBPP20226 339 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 BTCP35070 178 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 GABRA2P47869 451 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 INPP1P49441 399 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 TAS2R19P59542 299 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 DEFA1P59665 94 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 DEFA3P59666 94 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 MRPS15P82914 257 aaKnown RBP5.52□□□□□ -1.53
USP48-208ENST00000479177 RBM39Q14498 530 aaKnown RBP5.52□□□□□ -1.53
USP48-208ENST00000479177 RGS21Q2M5E4 152 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 ATPAF1Q5TC12 328 aaPredicted RBP5.52□□□□□ -1.53
USP48-208ENST00000479177 SLC35E4Q6ICL7 350 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 OR52W1Q6IF63 320 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 ZNF880Q6PDB4 577 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 Q6ZS49 121 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 MOB1BQ7L9L4 216 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 ZNF561Q8N587 486 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 POC5Q8NA72 575 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 TMEM229BQ8NBD8 167 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 OR4C16Q8NGL9 310 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 DEDD2Q8WXF8 326 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 MAFIPQ8WZ33 124 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 SNX22Q96L94 193 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 CCL13Q99616 98 aa5.52□□□□□ -1.53
USP48-208ENST00000479177 C7orf50Q9BRJ6 194 aaKnown RBP5.52□□□□□ -1.53
USP48-208ENST00000479177 SHARPINQ9H0F6 387 aa5.52□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms