RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 CCL21O00585 134 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 PRF1P14222 555 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 RAB4AP20338 218 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 FGF12P61328 243 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 VAX1Q5SQQ9 334 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 SMIM15Q7Z3B0 74 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 NFAM1Q8NET5 270 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-208ENST00000478423 OR4A4PQ8NGN8 299 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 THADAQ6YHU6 1953 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 IGKV1D-43A0A0B4J1Z2 117 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 CDS2O95674 445 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 C1orf185Q5T7R7 199 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 NCR3LG1Q68D85 454 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 LINC00114Q6XXX2 140 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 BSCL2Q96G97 398 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-208ENST00000478423 GINS3Q9BRX5 216 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 A0A1W2PRD5 423 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 A0A1W2PRF3 423 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 A0A1W2PRM7 423 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 NKX2-6A6NCS4 301 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 UCNP55089 124 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 R3HDM4Q96D70 268 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 ADTRPQ96IZ2 230 aa12.32□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF331Q9NQX6 463 aaPredicted RBP12.32□□□□□ -0.44
NPHP4-208ENST00000478423 IGHV3OR15-7A0A075B7D8 119 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 LY86O95711 162 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 CELA3AP09093 270 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 HOXD11P31277 338 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-208ENST00000478423 OPRK1P41145 380 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF90Q03938 601 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 UBE2V2Q15819 145 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 CSRP2Q16527 193 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 KRTCAP3Q53RY4 240 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 WNT2BQ93097 391 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 TIMP4Q99727 224 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 MMP26Q9NRE1 261 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ELF5Q9UKW6 265 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-208ENST00000478423 CRYM-AS1A6NIL9 109 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ATP6V1G2-DDX39BF2Z307 99 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 IGHMP01871 453 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 FGF2P09038 288 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 SFTA3P0C7M3 94 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 UQCC3Q6UW78 93 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 TIPARPQ7Z3E1 657 aaKnown RBP12.31□□□□□ -0.44
NPHP4-208ENST00000478423 BPIFCQ8NFQ6 507 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ADAMTS17Q8TE56 1095 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 WNT5BQ9H1J7 359 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 CADP27708 2225 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 MAP1LC3B2A6NCE7 125 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 SYNGR1O43759 233 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 IL24Q13007 206 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 GABRA6Q16445 453 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 IGSF11Q5DX21 431 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF826PQ6ZT77 177 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 MAP1LC3BQ9GZQ8 125 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF665Q9H7R5 613 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 A0A1W2PPQ1 181 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 PRRX1P54821 245 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF362Q5T0B9 420 aaPredicted RBP12.31□□□□□ -0.44
NPHP4-208ENST00000478423 C10orf128Q5T292 105 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 OR13D1Q8NGV5 346 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 CXorf58Q96LI9 332 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF835Q9Y2P0 537 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF407Q9C0G0 2248 aa12.31□□□□□ -0.44
NPHP4-208ENST00000478423 ZIC3O60481 467 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 CLN5O75503 358 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 UMODP07911 640 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 F2RP25116 425 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 HOXA6P31267 233 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 PPP1CCP36873 323 aaKnown RBP12.3□□□□□ -0.44
NPHP4-208ENST00000478423 DCAF12L2Q5VW00 463 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 KDF1Q8NAX2 398 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-208ENST00000478423 CHAC2Q8WUX2 184 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 RTN4RQ9BZR6 473 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 SCGB1D1O95968 90 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 PRDX2P32119 198 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 TMEM255AQ5JRV8 349 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF441Q8N8Z8 693 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF439Q8NDP4 499 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 OR1K1Q8NGR3 316 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 MOB3AQ96BX8 217 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 DYNLT3P51808 116 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 RSPO4Q2I0M5 234 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-208ENST00000478423 DBX2Q6ZNG2 339 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 OR51I2Q9H344 312 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 SLC25A22Q9H936 323 aa12.3□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF646O15015 1829 aaPredicted RBP12.3□□□□□ -0.44
NPHP4-208ENST00000478423 TSTD3H0UI37 97 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 C19orf57Q0VDD7 668 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 BATFQ16520 125 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 PRR27Q6MZM9 219 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 SHISA5Q8N114 240 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 RGP1Q92546 391 aaPredicted RBP12.29□□□□□ -0.44
NPHP4-208ENST00000478423 Q9N2K0 584 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 P2RY1P47900 373 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 DVL1P1P54792 670 aaPredicted RBP12.29□□□□□ -0.44
NPHP4-208ENST00000478423 PDZD11Q5EBL8 140 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 LINC00596Q86U02 117 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 MISP3Q96FF7 219 aa12.29□□□□□ -0.44
NPHP4-208ENST00000478423 ZNF703Q9H7S9 590 aaPredicted RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms