RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 OOSP1A8MZH6 123 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 OR7C1O76099 320 aaPredicted RBP11.22□□□□□ -0.61
UPF3A-204ENST00000475218 LPLP06858 475 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 BRS3P32247 399 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 KCNJ3P48549 501 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 GP2P55259 537 aaKnown RBP11.22□□□□□ -0.61
UPF3A-204ENST00000475218 SLC22A6Q4U2R8 563 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 AHSA2Q719I0 299 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 UBALD1Q8TB05 177 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 DERL3Q96Q80 235 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 RCC2Q9P258 522 aaKnown RBP11.22□□□□□ -0.61
UPF3A-204ENST00000475218 RAB26Q9ULW5 256 aa11.22□□□□□ -0.61
UPF3A-204ENST00000475218 A0A1W2PPE3 182 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 EFCAB10A6NFE3 127 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 CEACAM3P40198 252 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 GNG10P50151 68 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 INSL4Q14641 139 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 MPV17LQ2QL34 196 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 CNPY1Q3B7I2 92 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 FOXB2Q5VYV0 432 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 C8orf59Q8N0T1 100 aaPredicted RBP11.21□□□□□ -0.61
UPF3A-204ENST00000475218 OR5AU1Q8NGC0 362 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 OR56B4Q8NH76 319 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 SGCDQ92629 289 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 MUL1Q969V5 352 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 CREB3L1Q96BA8 519 aa11.21□□□□□ -0.61
UPF3A-204ENST00000475218 MT-ND4P03905 459 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 SNRNP70P08621 437 aaKnown RBP11.21□□□□□ -0.62
UPF3A-204ENST00000475218 LOXL3P58215 753 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 LSAMPQ13449 338 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 OXLD1Q5BKU9 147 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 ZNF497Q6ZNH5 498 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 DRAM1Q8N682 238 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 NANOGP1Q8N7R0 232 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 TMEM104Q8NE00 496 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 OR10A7Q8NGE5 316 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 TFAP2CQ92754 450 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 TOMM40LQ969M1 308 aa11.21□□□□□ -0.62
UPF3A-204ENST00000475218 DGCR14Q96DF8 476 aaKnown RBP11.21□□□□□ -0.62
UPF3A-204ENST00000475218 RBMXL1Q96E39 390 aaKnown RBP11.21□□□□□ -0.62
UPF3A-204ENST00000475218 TMEM30CPA0ZSE6 113 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 PRB2P02812 416 aaPredicted RBP11.2□□□□□ -0.62
UPF3A-204ENST00000475218 CSTBP04080 98 aaKnown RBP11.2□□□□□ -0.62
UPF3A-204ENST00000475218 CELP19835 753 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 SIGIRRQ6IA17 410 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 CCDC144NLQ6NUI1 221 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 LINC00596Q86U02 117 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 THNSL2Q86YJ6 484 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 BPIFB6Q8NFQ5 453 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 CAPSLQ8WWF8 208 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 RPEQ96AT9 228 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 R3HDM4Q96D70 268 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 PAK1IP1Q9NWT1 392 aaPredicted RBP11.2□□□□□ -0.62
UPF3A-204ENST00000475218 CHCHD3Q9NX63 227 aaKnown RBP11.2□□□□□ -0.62
UPF3A-204ENST00000475218 PTTG2Q9NZH5 202 aa11.2□□□□□ -0.62
UPF3A-204ENST00000475218 MRPS28Q9Y2Q9 187 aaKnown RBP11.2□□□□□ -0.62
UPF3A-204ENST00000475218 CD1AP06126 327 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 GTF2F2P13984 249 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 RPL5P46777 297 aaKnown RBP11.19□□□□□ -0.62
UPF3A-204ENST00000475218 WNT4P56705 351 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 EMX1Q04741 257 aaPredicted RBP11.19□□□□□ -0.62
UPF3A-204ENST00000475218 MADCAM1Q13477 382 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 ARSJQ5FYB0 599 aaPredicted RBP11.19□□□□□ -0.62
UPF3A-204ENST00000475218 GLIPR1L1Q6UWM5 242 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 SLC16A12Q6ZSM3 486 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 GAPTQ8N292 157 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 CCDC107Q8WV48 283 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 ST6GALNAC6Q969X2 333 aa11.19□□□□□ -0.62
UPF3A-204ENST00000475218 A0A1W2PRX2 142 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 SLC31A2O15432 143 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 ZNF780AO75290 641 aaPredicted RBP11.18□□□□□ -0.62
UPF3A-204ENST00000475218 MAS1P04201 325 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 GZMHP20718 246 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 MNDAP41218 407 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 TAS2R43P59537 309 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 ATAD3CQ5T2N8 411 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 FAM27D1Q5T7N8 215 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 C5orf24Q7Z6I8 188 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 JAGN1Q8N5M9 183 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 ARL11Q969Q4 196 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 AKR1E2Q96JD6 320 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 MRPS26Q9BYN8 205 aaKnown RBP11.18□□□□□ -0.62
UPF3A-204ENST00000475218 BANF2Q9H503 90 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 CKLFQ9UBR5 152 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 LSM2Q9Y333 95 aaKnown RBP11.18□□□□□ -0.62
UPF3A-204ENST00000475218 AMMECR1Q9Y4X0 333 aaPredicted RBP11.18□□□□□ -0.62
UPF3A-204ENST00000475218 IGHV3-43A0A0B4J1X8 118 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 C12orf77C9JDV5 145 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 PEX14O75381 377 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 TNFAIP8O95379 198 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 IGHV3-43DP0DP04 118 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 ARHGDIBP52566 201 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 ZNF816Q0VGE8 651 aaPredicted RBP11.18□□□□□ -0.62
UPF3A-204ENST00000475218 UNQ9370/PRO34162Q6UXP9 181 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 CDH26Q8IXH8 852 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 STX19Q8N4C7 294 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 C5orf56Q8N8D9 126 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 DRAXINQ8NBI3 349 aaPredicted RBP11.18□□□□□ -0.62
UPF3A-204ENST00000475218 ZNF439Q8NDP4 499 aa11.18□□□□□ -0.62
UPF3A-204ENST00000475218 OR52M1Q8NGK5 317 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 44.2 ms