RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 OR4F17Q8NGA8 305 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 OR10X1Q8NGY0 326 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 OR56B4Q8NH76 319 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 CCDC107Q8WV48 283 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 OR4F4Q96R69 305 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 LINC00574Q9H8X3 128 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 PCDHB16Q9NRJ7 776 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 PSORS1C1Q9UIG5 152 aa12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 MRPS28Q9Y2Q9 187 aaKnown RBP12.53□□□□□ -0.4
CCDC88B-205ENST00000472524 DNAH3Q8TD57 4116 aa12.52□□□□□ -0.4
CCDC88B-205ENST00000472524 A0A1W2PPI3 338 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 CASQ2O14958 399 aaPredicted RBP12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 PIN1P1O15428 100 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 AMY1AP04745 511 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 AMY2AP04746 511 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM106CPP0CH98 169 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 CELP19835 753 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 WNT4P56705 351 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 DOC2BQ14184 412 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 GPR176Q14439 515 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 AWAT2Q6E213 333 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 GLIPR1L1Q6UWM5 242 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 DRAM1Q8N682 238 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 OR10A7Q8NGE5 316 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 ARL11Q969Q4 196 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 DERL3Q96Q80 235 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 MOB4Q9Y3A3 225 aa12.52□□□□□ -0.41
CCDC88B-205ENST00000472524 IGHV3-43A0A0B4J1X8 118 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 AIPO00170 330 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 SDCBPO00560 298 aaPredicted RBP12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 IGHV3-43DP0DP04 118 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 GZMHP20718 246 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 FBLIM1Q8WUP2 373 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 VCXQ9H320 206 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 BANF2Q9H503 90 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 PLCXD1Q9NUJ7 323 aa12.51□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A18PA6NE21 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A16PA6NEW6 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A20PA6NIJ5 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A9PA6NNJ1 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A12PA8MX19 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A5PA8MXJ8 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 C15orf65H3BRN8 121 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 M0QZK8 103 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A15PP0C7V4 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A13PP0C7W8 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A14PP0C7W9 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM90A24PP0C7X0 464 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 TMEM11P17152 192 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 REG1BP48304 166 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 RAB7AP51149 207 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 CD83Q01151 205 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 HNF4GQ14541 408 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 KHDC1LQ5JSQ8 128 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 FAM53AQ6NSI3 398 aaPredicted RBP12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 C10orf99Q6UWK7 81 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 ZNF497Q6ZNH5 498 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 SLC16A12Q6ZSM3 486 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 REC114Q7Z4M0 266 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 THNSL2Q86YJ6 484 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 OR8H3Q8N146 312 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 NANOGP1Q8N7R0 232 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 MRAPQ8TCY5 172 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 ERGIC3Q9Y282 383 aa12.5□□□□□ -0.41
CCDC88B-205ENST00000472524 TCRBV4S1A1TA0A5B7 111 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 MCRIP1C9JLW8 97 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 CCRL2O00421 344 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 HSD17B6O14756 317 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 CRTAPO75718 401 aaPredicted RBP12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 IGKV1D-33P01593 117 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 IGKV1-33P01594 117 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 MT-ND4P03905 459 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 PF4V1P10720 104 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 TCTEX1D4Q5JR98 221 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 RAB12Q6IQ22 244 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 OR4X2Q8NGF9 303 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 OR4K15Q8NH41 348 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 MYDGFQ969H8 173 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 SELENOIQ9C0D9 397 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 SPACA1Q9HBV2 294 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 FKBP14Q9NWM8 211 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 GFOD1Q9NXC2 390 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 ETAA1Q9NY74 926 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 RCC2Q9P258 522 aaKnown RBP12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 TRAPPC2LQ9UL33 140 aa12.49□□□□□ -0.41
CCDC88B-205ENST00000472524 IGHV3-72A0A0B4J1Y9 119 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 ORC5O43913 435 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 CD1AP06126 327 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 MGMTP16455 207 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 MAPK3P27361 379 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 VHLP40337 213 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 GABPB1Q06547 395 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 INSL4Q14641 139 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 SYT6Q5T7P8 510 aaPredicted RBP12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 MOB3BQ86TA1 216 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 CDH26Q8IXH8 852 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 PRR18Q8N4B5 295 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 NKAIN3Q8N8D7 197 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 C5orf56Q8N8D9 126 aa12.48□□□□□ -0.41
CCDC88B-205ENST00000472524 TMEM104Q8NE00 496 aa12.48□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms