RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 Q6ZSR6 202 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF550Q7Z398 422 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 C9orf62Q8N4C0 152 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC35G3Q8N808 338 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 OR5A1Q8NGJ0 315 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 NEIL3Q8TAT5 605 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 BLNKQ8WV28 456 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 ZDHHC19Q8WVZ1 309 aaPredicted RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC7A6Q92536 515 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 DCUN1D4Q92564 292 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM230Q96A57 120 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SLC25A38Q96DW6 304 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 FAM19A4Q96LR4 140 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 C17orf77Q96MU5 243 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 OR52B2Q96RD2 323 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 NDFIP1Q9BT67 221 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 CST9LQ9H4G1 147 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 PLEKHA3Q9HB20 300 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 UQCC1Q9NVA1 299 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 RSL24D1Q9UHA3 163 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 RIMS3Q9UJD0 308 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SSR3Q9UNL2 185 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 BTRCQ9Y297 605 aa3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 YTHDF2Q9Y5A9 579 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 EIF4G3O43432 1585 aaKnown RBP3.8□□□□□ -1.8
CCDC88A-210ENST00000468534 SCAPERQ9BY12 1400 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 MED23Q9ULK4 1368 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A1B0GWB2 263 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 hADV38S2A0JD32 116 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 MYBPHLA2RUH7 354 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 MPTX1A8MV57 137 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 B4DXG7 233 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 D6RAR5 112 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 H7C1C5 153 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 H7C1H1 209 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 J3QT63 122 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 K7EQS6 105 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 REM1O75628 298 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 UPK1BO75841 260 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 MMP23AO75900 390 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 SEMA4FO95754 770 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 IGHG2P01859 326 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 CD55P08174 381 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 PSG2P11465 335 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 GGT1P19440 569 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 AZU1P20160 251 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 FGF7P21781 194 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 ZBTB25P24278 435 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 RND2P52198 227 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 LCN6P62502 163 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 HBG1P69891 147 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 HBG2P69892 147 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 HBA1P69905 142 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 LY6DQ14210 128 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 RSBN1Q5VWQ0 802 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF57Q68EA5 555 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM207Q6UWW9 146 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF620Q6ZNG0 422 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF767PQ75MW2 155 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 C12orf45Q8N5I9 185 aaPredicted RBP3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 ZFP41Q8N8Y5 198 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 OR5W2Q8NH69 310 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 OR1L3Q8NH93 324 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 OR2T6Q8NHC8 308 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 PCNPQ8WW12 178 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 APOBEC4Q8WW27 367 aaKnown RBP3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 HIST1H2BAQ96A08 127 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 TMEM101Q96IK0 257 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 TP53RKQ96S44 253 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 KIR2DL4Q99706 377 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 LITAFQ99732 161 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 SULT4A1Q9BR01 284 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 OR51I2Q9H344 312 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 POMKQ9H5K3 350 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 LHX9Q9NQ69 397 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 DMAC2Q9NW81 257 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 NAT8BQ9UHF3 227 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 LAMTOR2Q9Y2Q5 125 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 CHD5Q8TDI0 1954 aa3.79□□□□□ -1.8
CCDC88A-210ENST00000468534 IGKV1D-8A0A087WSZ0 117 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 A0A087WWV3 80 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 RBFOX3A6NFN3 312 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 SIGLEC16A6NMB1 481 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF726A6NNF4 738 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ZNF705EA8MWA4 302 aaPredicted RBP3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 H7C417 338 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 CCL25O15444 150 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 OR7C2O60412 319 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 SCO1O75880 301 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 ZFAND5O76080 213 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 LGALS1P09382 135 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 RBMY1CP0DJD4 496 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 EVI2AP22794 236 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 AGTR1P30556 359 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 MYCNOSP40205 109 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 H2BFSP57053 126 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 C1QTNF8P60827 252 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 HERV-K104P61576 105 aa3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 RPS27AP62979 156 aaKnown RBP3.78□□□□□ -1.8
CCDC88A-210ENST00000468534 HIST1H1AQ02539 215 aaPredicted RBP3.78□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms