RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 MDN1Q9NU22 5596 aa3.33□□□□□ -1.88
HMGB1-207ENST00000468384 hCG_1818297A0A087WSY0 165 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 A0A087WZ39 114 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 LOC102725191A0A1B0GVB3 256 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 FAM220BPB1ANY3 271 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 CIDEAO60543 219 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 BCAS1O75363 584 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF254O75437 659 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 KRT36O76013 467 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 IL3P08700 152 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 GLRA1P23415 457 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 DLX6P56179 175 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 IL18Q14116 193 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF74Q16587 644 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 DEFB114Q30KQ6 69 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 TTC23Q5W5X9 447 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 LCN8Q6JVE9 175 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 FBXW12Q6X9E4 464 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 EIF3MQ7L2H7 374 aaKnown RBP3.32□□□□□ -1.88
HMGB1-207ENST00000468384 HIST2H2ABQ8IUE6 130 aaPredicted RBP3.32□□□□□ -1.88
HMGB1-207ENST00000468384 LRRC8AQ8IWT6 810 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 OR4P4Q8NGL7 312 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 HPSE2Q8WWQ2 592 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 FCAMRQ8WWV6 532 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 HIST1H2ACQ93077 130 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF479Q96JC4 524 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 CCDC115Q96NT0 180 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 PANX1Q96RD7 426 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 TMEM43Q9BTV4 400 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 GLIPR2Q9H4G4 154 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 VIPAS39Q9H9C1 493 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 INTS9Q9NV88 658 aaKnown RBP3.32□□□□□ -1.88
HMGB1-207ENST00000468384 RNF14Q9UBS8 474 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 MRM2Q9UI43 246 aaKnown RBP3.32□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF580Q9UK33 172 aa3.32□□□□□ -1.88
HMGB1-207ENST00000468384 A0A0J9YXV3 536 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 RNF222A6NCQ9 220 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF726A6NNF4 738 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 MPTX1A8MV57 137 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 SUPT3HB4E1H0 165 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 FTCDNL1E5RQL4 147 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 WBP4O75554 376 aaKnown RBP3.31□□□□□ -1.88
HMGB1-207ENST00000468384 HPRP00739 348 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 KRT14P02533 472 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 TFPTP0C1Z6 253 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 PRKACBP22694 351 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 NPY1RP25929 384 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 ACTA2P62736 377 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 RPL31P62899 125 aaKnown RBP3.31□□□□□ -1.88
HMGB1-207ENST00000468384 ACTG2P63267 376 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 ACTC1P68032 377 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 ACTA1P68133 377 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 BNIP2Q12982 314 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 PRAMEF5Q5TYX0 476 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 C1orf140Q5VVS0 124 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 PYHIN1Q6K0P9 492 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 SPATA24Q86W54 205 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 NUDCD3Q8IVD9 361 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 ARFGAP2Q8N6H7 521 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 BBS1Q8NFJ9 593 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 OR13A1Q8NGR1 328 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 LRRC29Q8WV35 223 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 TMEM37Q8WXS4 190 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 CDS1Q92903 461 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 EMG1Q92979 244 aaKnown RBP3.31□□□□□ -1.88
HMGB1-207ENST00000468384 SLC25A36Q96CQ1 311 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 HSPB9Q9BQS6 159 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 NEK6Q9HC98 313 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 S100A14Q9HCY8 104 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 GLTPQ9NZD2 209 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 PTTG3PQ9NZH4 202 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 B9D1Q9UPM9 204 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 IFT52Q9Y366 437 aa3.31□□□□□ -1.88
HMGB1-207ENST00000468384 IGHV2-26A0A0B4J1V2 119 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 LOC100506127A0A0U1RQW1 187 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 FAM240BA0A1B0GVZ2 78 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 METTL21EPA6NDL7 271 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 FAM183AA6NL82 134 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 HSBP1L1C9JCN9 74 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 G3V318 75 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 ARPC3O15145 178 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 SOCS1O15524 211 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 RNF13O43567 381 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 IFI6P09912 130 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 SLC2A2P11168 524 aaPredicted RBP3.3□□□□□ -1.88
HMGB1-207ENST00000468384 ZNF44P15621 663 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 CXCR1P25024 350 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 P2RY14Q15391 338 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 OR8G1Q15617 311 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 Q3ZCU0 254 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 SPANXN4Q5MJ08 99 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 DCST2Q5T1A1 773 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 C9orf47Q6ZRZ4 202 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 FOXL2NBQ6ZUU3 175 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 C6orf120Q7Z4R8 191 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 NFE4Q86UQ8 179 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 CALHM1Q8IU99 346 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 TGIF2LXQ8IUE1 241 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 LINC00469Q8N7U9 141 aa3.3□□□□□ -1.88
HMGB1-207ENST00000468384 ZNRF1Q8ND25 227 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms