RNA–Protein interactions for RNA: ENST00000461897.5

COL4A6-204, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,889 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-204ENST00000461897 TMEM56Q96MV1 263 aa10.63□□□□□ -0.71
COL4A6-204ENST00000461897 USB1Q9BQ65 265 aaKnown RBP10.63□□□□□ -0.71
COL4A6-204ENST00000461897 PBDC1Q9BVG4 233 aa10.63□□□□□ -0.71
COL4A6-204ENST00000461897 C1QTNF5Q9BXJ0 243 aa10.63□□□□□ -0.71
COL4A6-204ENST00000461897 HIPK2Q9H2X6 1198 aa10.63□□□□□ -0.71
COL4A6-204ENST00000461897 ST3GAL6Q9Y274 331 aa10.63□□□□□ -0.71
COL4A6-204ENST00000461897 TMEM56-RWDD3S4R434 201 aa10.63□□□□□ -0.71
COL4A6-204ENST00000461897 PTPRQQ9UMZ3 2332 aa10.63□□□□□ -0.71
COL4A6-204ENST00000461897 DUXBA0A1W2PPF3 345 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 CLEC18AA5D8T8 446 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 XRCC2O43543 280 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 EIF3GO75821 320 aaKnown RBP eCLIP10.62□□□□□ -0.71
COL4A6-204ENST00000461897 ACAA1P09110 424 aaPredicted RBP10.62□□□□□ -0.71
COL4A6-204ENST00000461897 CCL2P13500 99 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 ZNF44P15621 663 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 AADACP22760 399 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 IGHV1-2P23083 117 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 FXYD4P59646 89 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 FOXF2Q12947 444 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 PHLDA2Q53GA4 152 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 SP5Q6BEB4 398 aaPredicted RBP10.62□□□□□ -0.71
COL4A6-204ENST00000461897 VWA1Q6PCB0 445 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 ETV3LQ6ZN32 361 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 SEM1Q6ZVN7 128 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 CNEP1R1Q8N9A8 125 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 CLEC18CQ8NCF0 446 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 TMEM222Q9H0R3 208 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 SLC35B3Q9H1N7 401 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 RPS10P5Q9NQ39 176 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 ZZEF1O43149 2961 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 SHANK1Q9Y566 2161 aa10.62□□□□□ -0.71
COL4A6-204ENST00000461897 TRDCB7Z8K6 153 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 MPPED1O15442 326 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 PITX3O75364 302 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 PPYP01298 95 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 CRYABP02511 175 aaKnown RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 ARR3P36575 388 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 HERV-K104P61576 105 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 EWSR1Q01844 656 aaKnown RBP eCLIP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 ZNF92Q03936 586 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 GNMTQ14749 295 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 TSC22D1Q15714 1073 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 ZFP82Q8N141 532 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 OR5L1Q8NGL2 311 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 OR1J1Q8NGS3 322 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 DYRK2Q92630 601 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 SPACA1Q9HBV2 294 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 METTL1Q9UBP6 276 aaKnown RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 IGF2RP11717 2491 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 C3orf85A0A1B0GTC6 90 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 C5orf49A4QMS7 147 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 MBD3L4A6NDZ8 208 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 MBD3L3A6NE82 208 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 MBD3L5A6NJ08 208 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 UMAD1C9J7I0 102 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 PHF1O43189 567 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 MMP9P14780 707 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 NHLH2Q02577 135 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 ZNF616Q08AN1 781 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 ZNF266Q14584 549 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 Q6ZT83 130 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 SAXO1Q8IYX7 474 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 OR2C3Q8N628 320 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 SLC35G3Q8N808 338 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 Q8NA96 180 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 OR11L1Q8NGX0 322 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 MBD3L2Q8NHZ7 208 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 POM121L2Q96KW2 1035 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 TP53RKQ96S44 253 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 SPIN2AQ99865 258 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 SPIN2BQ9BPZ2 258 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 SH3BGRL3Q9H299 93 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 SEBOXQ9HB31 216 aaPredicted RBP10.61□□□□□ -0.71
COL4A6-204ENST00000461897 PIEZO2Q9H5I5 2752 aa10.61□□□□□ -0.71
COL4A6-204ENST00000461897 INTS1Q8N201 2190 aaKnown RBP10.6□□□□□ -0.71
COL4A6-204ENST00000461897 BTBD17A6NE02 478 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 TNFSF13O75888 250 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 LYZL6O75951 148 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 ZNF205O95201 554 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 CCNOP22674 350 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 GNRHRP30968 328 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 SNRPEP62304 92 aaKnown RBP10.6□□□□□ -0.71
COL4A6-204ENST00000461897 EIF2S3LQ2VIR3 472 aaKnown RBP10.6□□□□□ -0.71
COL4A6-204ENST00000461897 ZNF324BQ6AW86 544 aaPredicted RBP10.6□□□□□ -0.71
COL4A6-204ENST00000461897 FAM180AQ6UWF9 173 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 CLEC9AQ6UXN8 241 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 DPPA2Q7Z7J5 298 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 MDP1Q86V88 176 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 C1QL4Q86Z23 238 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 YPEL4Q96NS1 127 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 PARP12Q9H0J9 701 aaKnown RBP10.6□□□□□ -0.71
COL4A6-204ENST00000461897 RAXQ9Y2V3 346 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 FAM215AQ9Y5M1 114 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 ARID1AO14497 2285 aa10.6□□□□□ -0.71
COL4A6-204ENST00000461897 TUSC2O75896 110 aa10.59□□□□□ -0.71
COL4A6-204ENST00000461897 CNOT4O95628 575 aaKnown RBP10.59□□□□□ -0.71
COL4A6-204ENST00000461897 NAPSAO96009 420 aa10.59□□□□□ -0.71
COL4A6-204ENST00000461897 IGHV2-5P01817 119 aa10.59□□□□□ -0.71
COL4A6-204ENST00000461897 SNRNP70P08621 437 aaKnown RBP10.59□□□□□ -0.71
COL4A6-204ENST00000461897 RAB5AP20339 215 aa10.59□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms