RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 CHSY1Q86X52 802 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 ZADH2Q8N4Q0 377 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 KIR3DL3Q8N743 410 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 PLPP5Q8NEB5 264 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 OR2A12Q8NGT7 310 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BHQ93079 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 MRPL53Q96EL3 112 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 FEVQ99581 238 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BNQ99877 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 HIST1H2BMQ99879 126 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC25A31Q9H0C2 315 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 RBKSQ9H477 322 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 MED29Q9NX70 200 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 COQ4Q9Y3A0 265 aa4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 MTCL1Q9Y4B5 1905 aaKnown RBP4.08□□□□□ -1.76
CCDC88A-209ENST00000456975 C7orf66A4D0T2 115 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 LRP5LA4QPB2 252 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 DIRC3C9JPN6 131 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 INMT-MINDY4F8WBC2 141 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 M0R2Z0 102 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 AGPAT2O15120 278 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 GALR3O60755 368 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 KLF8O95600 359 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 CD14P08571 375 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 MMP7P09237 267 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 EPCAMP16422 314 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 RPL35AP18077 110 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 RPL7P18124 248 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 SRD5A1P18405 259 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TNFRSF1BP20333 461 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 PSMB1P20618 241 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 OPRD1P41143 372 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TAS2R31P59538 309 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 RPS25P62851 125 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 SRPXP78539 464 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 FABP5Q01469 135 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 C1orf61Q13536 156 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 SIX1Q15475 284 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 UBE2V2Q15819 145 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TIGITQ495A1 244 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ZFAND6Q6FIF0 208 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 HEPN1Q6WQI6 88 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 BCDIN3DQ7Z5W3 292 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF440Q8IYI8 595 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 DEFB107AQ8IZN7 70 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 OR4L1Q8NH43 312 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 NEIL2Q969S2 332 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 DDOQ99489 341 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ANAPC13Q9BS18 74 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 MAGIXQ9H6Y5 334 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 EXOSC3Q9NQT5 275 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 UQCC1Q9NVA1 299 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF586Q9NXT0 402 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 GNG12Q9UBI6 72 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 KLK11Q9UBX7 282 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 WIPI2Q9Y4P8 454 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM8BA6NDV4 472 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 LRRC3CA6NJW4 275 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 IDSB3KWA1 339 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 MCRIP1C9JLW8 97 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 PRSS46E5RG02 174 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 H0YIZ8 118 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 H7BYZ3 331 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 SOCS2O14508 198 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 VCYO14598 125 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 PLPP2O43688 288 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 HLA-DQA2P01906 255 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 H2AFZP0C0S5 128 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 CXCL2P19875 107 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ZFP36P26651 326 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 NMBRP28336 390 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 OR10J1P30954 320 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TNFSF8P32971 234 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TSFMP43897 325 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 UBA52P62987 128 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM267Q0VDI3 215 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 HSPB3Q12988 150 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 RUNX3Q13761 415 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 PDGFRLQ15198 375 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 CTU2Q2VPK5 515 aaKnown RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 LYPLAL1Q5VWZ2 237 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNF660Q6AZW8 331 aaPredicted RBP4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 SLC25A47Q6Q0C1 308 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 UNQ5815/PRO19632Q6UWF5 114 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 GLIPR1L1Q6UWM5 242 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 FAM19A1Q7Z5A9 133 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 MARCH9Q86YJ5 346 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 TMEM86AQ8N2M4 240 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 LINC00471Q8N535 108 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 OR8G5Q8NG78 346 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 OR5AP2Q8NGF4 316 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 OR1B1Q8NGR6 318 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 OR1F12Q8NHA8 337 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 ZNRF2Q8NHG8 242 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 UPRTQ96BW1 309 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 LRRC58Q96CX6 371 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 DIRAS2Q96HU8 199 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 IP6K3Q96PC2 410 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 RASL11BQ9BPW5 248 aa4.07□□□□□ -1.76
CCDC88A-209ENST00000456975 EBPLQ9BY08 206 aa4.07□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms