RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 BCL2A1Q16548 175 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 NSUN5P1Q3KNT7 163 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 HSD17B12Q53GQ0 312 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 HES5Q5TA89 166 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 METTL11BQ5VVY1 283 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 RPL22L1Q6P5R6 122 aaKnown RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 FAM220AQ7Z4H9 259 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 PRSS58Q8IYP2 241 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 GABRG1Q8N1C3 465 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 YIPF7Q8N8F6 280 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 DUSP18Q8NEJ0 188 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 LGALS14Q8TCE9 139 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 Q96M85 177 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 ZNF285Q96NJ3 590 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 ZFP3Q96NJ6 502 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 GPX7Q96SL4 187 aaPredicted RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 ATP5SQ99766 215 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 PDCD1LG2Q9BQ51 273 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 NUDT9Q9BW91 350 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 SLC19A3Q9BZV2 496 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 OR8D2Q9GZM6 311 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 NDEL1Q9GZM8 345 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 MFFQ9GZY8 342 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 UCK1Q9HA47 277 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 UBQLN4Q9NRR5 601 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 PLSCR3Q9NRY6 295 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 PAQR5Q9NXK6 330 aaPredicted RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 ZNF581Q9P0T4 197 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 ABRACLQ9P1F3 81 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 DHCR7Q9UBM7 475 aaKnown RBP3.14□□□□□ -1.91
VPS29-202ENST00000447578 MMACHCQ9Y4U1 282 aa3.14□□□□□ -1.91
VPS29-202ENST00000447578 ATG2AQ2TAZ0 1938 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TICRRQ7Z2Z1 1910 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 A0A1W2PPR1 153 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TVP23AA6NH52 213 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ZNF879B4DU55 563 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 H7C1C5 153 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 PIN1P1O15428 100 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ICOSLGO75144 302 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 UBL3O95164 117 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 DHFRP00374 187 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 CD14P08571 375 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TACSTD2P09758 323 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 UCHL1P09936 223 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ASAH2BP0C7U1 165 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 FOLR1P15328 257 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 SRMP19623 302 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 S100A1P23297 94 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 CXCR1P25024 350 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ERP29P30040 261 aaKnown RBP3.13□□□□□ -1.91
VPS29-202ENST00000447578 SLC6A1P30531 599 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 PPICP45877 212 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 UQCRFS1P47985 274 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 CSNK1EP49674 416 aaKnown RBP3.13□□□□□ -1.91
VPS29-202ENST00000447578 RRAS2P62070 204 aaPredicted RBP3.13□□□□□ -1.91
VPS29-202ENST00000447578 RPS11P62280 158 aaKnown RBP eCLIP3.13□□□□□ -1.91
VPS29-202ENST00000447578 LCN6P62502 163 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ZNF117Q03924 483 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TLE4Q04727 773 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 RPL18Q07020 188 aaKnown RBP3.13□□□□□ -1.91
VPS29-202ENST00000447578 PLCXD2Q0VAA5 305 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 SKP2Q13309 424 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 BIKQ13323 160 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 MAB21L1Q13394 359 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 AANATQ16613 207 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 CCDC58Q4VC31 144 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 YIF1BQ5BJH7 314 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 MESTQ5EB52 335 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 UBE2NLQ5JXB2 153 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 BCL2L15Q5TBC7 163 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 LINC01590Q5TEZ4 76 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 HACD4Q5VWC8 232 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 OTPQ5XKR4 325 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 OLFML2AQ68BL7 652 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TIGD3Q6B0B8 471 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 UNQ9370/PRO34162Q6UXP9 181 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 BAIAP2L2Q6UXY1 529 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 FAM122BQ7Z309 247 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 MARCH3Q86UD3 253 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 C17orf82Q86X59 251 aaPredicted RBP3.13□□□□□ -1.91
VPS29-202ENST00000447578 TCTE3Q8IZS6 198 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TOMM5Q8N4H5 51 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ZNF433Q8N7K0 673 aaPredicted RBP3.13□□□□□ -1.91
VPS29-202ENST00000447578 ASCC1Q8N9N2 400 aaKnown RBP3.13□□□□□ -1.91
VPS29-202ENST00000447578 OR6N2Q8NGY6 317 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 OR2T4Q8NH00 348 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ZNF721Q8TF20 911 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 THEM6Q8WUY1 208 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 CREB3L1Q96BA8 519 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 RNF170Q96K19 258 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 DERL3Q96Q80 235 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TSPAN32Q96QS1 320 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 KLHDC3Q9BQ90 382 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TMEM246Q9BRR3 403 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 MARVELD1Q9BSK0 173 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 RNF126Q9BV68 326 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 TBL1XR1Q9BZK7 514 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 SLC7A5P2Q9GIP4 190 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 ACTR6Q9GZN1 396 aa3.13□□□□□ -1.91
VPS29-202ENST00000447578 DNTTIP1Q9H147 329 aa3.13□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms