RNA–Protein interactions for RNA: ENST00000445503.5

MSH6-204, Transcript of mutS homolog 6, humanhuman

TSL 1 (best)

Gene MSH6, Length 4,158 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-204ENST00000445503 NGFP01138 241 aa10.23□□□□□ -0.77
MSH6-204ENST00000445503 SUCLG1P53597 346 aaKnown RBP10.23□□□□□ -0.77
MSH6-204ENST00000445503 UBE2NP61088 152 aaKnown RBP10.23□□□□□ -0.77
MSH6-204ENST00000445503 HLA-DRB3P79483 266 aa10.23□□□□□ -0.77
MSH6-204ENST00000445503 ZNF816Q0VGE8 651 aaPredicted RBP10.23□□□□□ -0.77
MSH6-204ENST00000445503 RSPO1Q2MKA7 263 aaPredicted RBP10.23□□□□□ -0.77
MSH6-204ENST00000445503 TMEM164Q5U3C3 297 aa10.23□□□□□ -0.77
MSH6-204ENST00000445503 CST9LP1Q5W188 147 aa10.23□□□□□ -0.77
MSH6-204ENST00000445503 CXorf67Q86X51 503 aaPredicted RBP10.23□□□□□ -0.77
MSH6-204ENST00000445503 SELENOHQ8IZQ5 122 aaKnown RBP10.23□□□□□ -0.77
MSH6-204ENST00000445503 DNASE2BQ8WZ79 361 aa10.23□□□□□ -0.77
MSH6-204ENST00000445503 MSI2Q96DH6 328 aaKnown RBP10.23□□□□□ -0.77
MSH6-204ENST00000445503 OBP2BQ9NPH6 170 aa10.23□□□□□ -0.77
MSH6-204ENST00000445503 LYL1P12980 280 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 RPS23P62266 143 aaKnown RBP10.22□□□□□ -0.77
MSH6-204ENST00000445503 CLN3Q13286 438 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 ZNF383Q8NA42 475 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 HPSE2Q8WWQ2 592 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 SF3B5Q9BWJ5 86 aaKnown RBP10.22□□□□□ -0.77
MSH6-204ENST00000445503 HINT2Q9BX68 163 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 DEFB127Q9H1M4 99 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 DOK5Q9P104 306 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 LAMP3Q9UQV4 416 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 CNOT1A5YKK6 2376 aaKnown RBP10.22□□□□□ -0.77
MSH6-204ENST00000445503 CEACAM18A8MTB9 384 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 PHOX2AO14813 284 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 SOX15O60248 233 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 CA11O75493 328 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 COX6A1P12074 109 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 HOXC12P31275 282 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 ADGRG7Q96K78 797 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 SNX22Q96L94 193 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 UFSP2Q9NUQ7 469 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 CACNA1GO43497 2377 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 IGKV1D-13A0A0B4J2D9 117 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 CLEC18AA5D8T8 446 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 IGKV1-13P0DP09 117 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 MLF1P58340 268 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 CLEC18CQ8NCF0 446 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 MAFAQ8NHW3 353 aaPredicted RBP10.22□□□□□ -0.77
MSH6-204ENST00000445503 GPR61Q9BZJ8 451 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 BTBD17A6NE02 478 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 CTSSP25774 331 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 APOBEC3DQ96AK3 386 aaPredicted RBP10.22□□□□□ -0.77
MSH6-204ENST00000445503 ATP5SQ99766 215 aa10.22□□□□□ -0.77
MSH6-204ENST00000445503 A0A1W2PPQ1 181 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 C5orf52A6NGY3 159 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 PITX3O75364 302 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 FAM58AQ8N1B3 248 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 OR4F5Q8NH21 305 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 CA5BP1Q8WTZ4 195 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 OR4F4Q96R69 305 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 SLC25A22Q9H936 323 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 KIAA1456Q9P272 454 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 SPEGQ15772 3267 aa10.21□□□□□ -0.77
MSH6-204ENST00000445503 SLC22A20A6NK97 555 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 ARG2P78540 354 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 DMBX1Q8NFW5 382 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 C18orf12Q96KH6 178 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 FER1L5A0AVI2 2057 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 TSTD3H0UI37 97 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 H7BYZ3 331 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 UMODP07911 640 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 HIST3H3Q16695 136 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 C10orf91Q5T1B1 145 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 ZNF573Q86YE8 665 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 M1APQ8TC57 530 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 STRADBQ9C0K7 418 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 ZNF391Q9UJN7 358 aa10.21□□□□□ -0.78
MSH6-204ENST00000445503 EP300Q09472 2414 aaPredicted RBP10.21□□□□□ -0.78
MSH6-204ENST00000445503 hCG_38984A0A1B0GV85 526 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 CEACAM6P40199 344 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 IL24Q13007 206 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 IL15RAQ13261 267 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 MRPL49Q13405 166 aaKnown RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 FIP1L1Q6UN15 594 aaKnown RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 SSX9Q7RTT3 188 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 SAP25Q8TEE9 199 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 LYRM2Q9NU23 88 aaPredicted RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 METTL1Q9UBP6 276 aaKnown RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 ANAPC10Q9UM13 185 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 ROS1P08922 2347 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 IGLV3-32A0A0A0MS00 114 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 MAP1LC3B2A6NCE7 125 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 CLDN34H7C241 214 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 SYNGR2O43760 224 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 GABRA2P47869 451 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 MRPL14Q6P1L8 145 aaKnown RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 C6orf15Q6UXA7 325 aaPredicted RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 CNEP1R1Q8N9A8 125 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 CPEB3Q8NE35 698 aaKnown RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 OR10V1Q8NGI7 309 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 RFESDQ8TAC1 157 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 TMEM37Q8WXS4 190 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 GPR146Q96CH1 333 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 HES7Q9BYE0 225 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 MAP1LC3BQ9GZQ8 125 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 OR51M1Q9H341 326 aa10.2□□□□□ -0.78
MSH6-204ENST00000445503 PGLYRP1O75594 196 aaPredicted RBP10.2□□□□□ -0.78
MSH6-204ENST00000445503 ERVS71-1P61550 626 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms