RNA–Protein interactions for RNA: ENST00000443046.5

HMGN1-208, Transcript of high mobility group nucleosome binding domain 1, human

TSL 3

Gene HMGN1, Length 823 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-208	ENST00000443046	RYR1	P21817	5038 aa		11.13	□□□□□ -0.63
HMGN1-208	ENST00000443046	HSPB6	O14558	160 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	IGHV4-30-4	P0DP06	118 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	DBT	P11182	482 aa	Known RBP	11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	KCNJ3	P48549	501 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	NANOS3	P60323	173 aa	Known RBP	11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	ZNF85	Q03923	595 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	GALE	Q14376	348 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	ACSM6	Q6P461	480 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR51A4	Q8NGJ6	313 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR52M1	Q8NGK5	317 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR13C9	Q8NGT0	318 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	RBMXL1	Q96E39	390 aa	Known RBP	11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR51J1	Q9H342	316 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	CHCHD3	Q9NX63	227 aa	Known RBP	11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	ARL2BP	Q9Y2Y0	163 aa		11.12	□□□□□ -0.63
HMGN1-208	ENST00000443046	TNC	P24821	2201 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	KMT2A	Q03164	3969 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	TRAV39	A0A0B4J263	110 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046		G3V318	75 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	C15orf65	H3BRN8	121 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	DCTN3	O75935	186 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	GZMH	P20718	246 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	RAB9A	P51151	201 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	ZNF137P	P52743	207 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	KISS1	Q15726	138 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	TP53I3	Q53FA7	332 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	TMEM65	Q6PI78	240 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR10H4	Q8NGA5	316 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR6Q1	Q8NGQ2	317 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR10AC1	Q8NH08	325 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	UTP4	Q969X6	686 aa	Known RBP	11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	CCDC124	Q96CT7	223 aa	Known RBP	11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	NSL1	Q96IY1	281 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	NEK6	Q9HC98	313 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	MED4	Q9NPJ6	270 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	GNG8	Q9UK08	70 aa		11.11	□□□□□ -0.63
HMGN1-208	ENST00000443046	MITF	O75030	526 aa	Predicted RBP	11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	TMEM225B	P0DP42	221 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	CCR9	P51686	369 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	IL13RA2	Q14627	380 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046		Q3ZCU0	254 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	HSP90B2P	Q58FF3	399 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	LYPD6	Q86Y78	171 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	MINDY2	Q8NBR6	621 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	PXT1	Q8NFP0	134 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR5B12	Q96R08	314 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	ZCCHC4	Q9H5U6	513 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	GFOD1	Q9NXC2	390 aa		11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	ZNF107	Q9UII5	783 aa	Predicted RBP	11.1	□□□□□ -0.63
HMGN1-208	ENST00000443046	FKBP6	O75344	327 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	JTB	O76095	146 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	FAM107A	O95990	144 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	OCM2	P0CE71	109 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	OCM	P0CE72	109 aa	Predicted RBP	11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	T-ENOL	P0DO92	83 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	SLURP1	P55000	103 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	GABPB1	Q06547	395 aa	Predicted RBP	11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	TMED1	Q13445	227 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	ZNF439	Q8NDP4	499 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	NR1H4	Q96RI1	486 aa	Predicted RBP	11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	TOLLIP	Q9H0E2	274 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	ALX4	Q9H161	411 aa	Predicted RBP	11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	GHITM	Q9H3K2	345 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	IFT22	Q9H7X7	185 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	WSB1	Q9Y6I7	421 aa		11.09	□□□□□ -0.63
HMGN1-208	ENST00000443046	OR4C45	A6NMZ5	311 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	LINC01619	G3V211	115 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	TXNL1	O43396	289 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	OR8U9	P0C7N5	309 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	IL3RA	P26951	378 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	ZNF134	P52741	427 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	SRSF7	Q16629	238 aa	Known RBP eCLIP	11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	C19orf54	Q5BKX5	351 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	ZNF691	Q5VV52	312 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	ASCL4	Q6XD76	172 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	SLC25A48	Q6ZT89	311 aa	Known RBP	11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	FAM220A	Q7Z4H9	259 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	KCTD20	Q7Z5Y7	419 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	OR13C3	Q8NGS6	347 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	ARPC1A	Q92747	370 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	SPATA25	Q9BR10	227 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	DPCD	Q9BVM2	203 aa	Predicted RBP	11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	FAM118A	Q9NWS6	357 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	ZNF581	Q9P0T4	197 aa		11.08	□□□□□ -0.64
HMGN1-208	ENST00000443046	IGHV7-81	A0A0B4J1V7	117 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	TRAV41	A0A0B4J266	112 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	TCRBV3S1	A0A5B6	114 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046		J3QRE1	110 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	SDCBP	O00560	298 aa	Predicted RBP	11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	ATP6V0E1	O15342	81 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	SLC31A2	O15432	143 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	ORC5	O43913	435 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	HLA-DRB1	P01911	266 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	SLC2A2	P11168	524 aa	Predicted RBP	11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	PIGY	Q3MUY2	71 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	KDM4D	Q6B0I6	523 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	PARP16	Q8N5Y8	322 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	SUMF2	Q8NBJ7	301 aa		11.07	□□□□□ -0.64
HMGN1-208	ENST00000443046	ARL11	Q969Q4	196 aa		11.07	□□□□□ -0.64

Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms