RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 RCVRNP35243 200 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 AP3S2P59780 193 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 IL13RA1P78552 427 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 GUCA2AQ02747 115 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 DCTN2Q13561 401 aaKnown RBP10.03□□□□□ -0.8
PTPRF-208ENST00000437607 ZMYND11Q15326 602 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 OLFML2AQ68BL7 652 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 MOB1BQ7L9L4 216 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 ZNF561Q8N587 486 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 SPICQ8N5J4 248 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 CD177Q8N6Q3 437 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 OR52I2Q8NH67 350 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 DYRK2Q92630 601 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 GAFA1Q96PS6 74 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 CHST6Q9GZX3 395 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 SEBOXQ9HB31 216 aaPredicted RBP10.03□□□□□ -0.8
PTPRF-208ENST00000437607 PALMDQ9NP74 551 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 ABCB10Q9NRK6 738 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 NUP50Q9UKX7 468 aa10.03□□□□□ -0.8
PTPRF-208ENST00000437607 TMEM30CPA0ZSE6 113 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 MEIS3P1A6NDR6 274 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 ADAM20O43506 726 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 FOXH1O75593 365 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 UPK1BO75841 260 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 FSTL3O95633 263 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 TFF1P04155 84 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 MELTFP08582 738 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 IL7P13232 177 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 RPS2P15880 293 aaKnown RBP10.02□□□□□ -0.81
PTPRF-208ENST00000437607 DTYMKP23919 212 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 GDNFP39905 211 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 OR3A1P47881 315 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 SSBP1Q04837 148 aaKnown RBP10.02□□□□□ -0.81
PTPRF-208ENST00000437607 EDDM3AQ14507 147 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 GRK1Q15835 563 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF57Q68EA5 555 aaPredicted RBP10.02□□□□□ -0.81
PTPRF-208ENST00000437607 DCDC5Q6ZRR9 648 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 NLRC3Q7RTR2 1065 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 FAM216BQ8N7L0 139 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 GPX8Q8TED1 209 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 TRIM63Q969Q1 353 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 SDSLQ96GA7 329 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 MED30Q96HR3 178 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 SNX22Q96L94 193 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 CCL13Q99616 98 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 SDHCQ99643 169 aaPredicted RBP10.02□□□□□ -0.81
PTPRF-208ENST00000437607 FAAP24Q9BTP7 215 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 PATZ1Q9HBE1 687 aaKnown RBP10.02□□□□□ -0.81
PTPRF-208ENST00000437607 ING3Q9NXR8 418 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 KCNK7Q9Y2U2 307 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 INSIG2Q9Y5U4 225 aa10.02□□□□□ -0.81
PTPRF-208ENST00000437607 SOX21Q9Y651 276 aaPredicted RBP10.02□□□□□ -0.81
PTPRF-208ENST00000437607 A0A1W2PQ09 198 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 MEIOCA2RUB1 952 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 FUOMA2VDF0 154 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 F5H0A9 414 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 MGST3O14880 152 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 PSPNO60542 156 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF737O75373 536 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 RBBP9O75884 186 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 CSN2P05814 226 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 RNASE1P07998 156 aaKnown RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 FCGR3AP08637 254 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 CSF1P09603 554 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 GSTT2BP0CG30 244 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 LMO1P25800 156 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 TMEM155Q4W5P6 130 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 PDLIM3Q53GG5 364 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 LRRC10Q5BKY1 277 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 BRICD5Q6PL45 260 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 TREML4Q6UXN2 200 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF788Q6ZQV5 615 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 GDPD3Q7L5L3 318 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 TOMM5Q8N4H5 51 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 OR8B3Q8NGG8 313 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 SETD6Q8TBK2 473 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 OR8B2Q96RD0 313 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 TMEM246Q9BRR3 403 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 HDHD3Q9BSH5 251 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 THAP7Q9BT49 309 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 FAM234AQ9H0X4 552 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 RIMS4Q9H426 269 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 UNKLQ9H9P5 680 aaKnown RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 ZNF286AQ9HBT8 521 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 TMEM165Q9HC07 324 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 TAS2R8Q9NYW2 309 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 ELF5Q9UKW6 265 aaPredicted RBP10.01□□□□□ -0.81
PTPRF-208ENST00000437607 AUP1Q9Y679 476 aa10.01□□□□□ -0.81
PTPRF-208ENST00000437607 TMEM82A0PJX8 343 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 CEACAM18A8MTB9 384 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 A8MXK9 166 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 NDUFB3O43676 98 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 SSX5O60225 188 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 ECDO95905 644 aaPredicted RBP10□□□□□ -0.81
PTPRF-208ENST00000437607 SELLP14151 372 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 NDUFB7P17568 137 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 AMY2BP19961 511 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 FAUP35544 74 aaKnown RBP10□□□□□ -0.81
PTPRF-208ENST00000437607 GLP1RP43220 463 aa10□□□□□ -0.81
PTPRF-208ENST00000437607 EDDM3BP56851 147 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms