RNA–Protein interactions for RNA: ENST00000426576.5

CCDC88A-205, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 4,500 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-205ENST00000426576 JAGN1Q8N5M9 183 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RNF182Q8N6D2 247 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 OR10K1Q8NGX5 313 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 KLF14Q8TD94 323 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 GPR119Q8TDV5 335 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 KCTD7Q96MP8 289 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UCN2Q96RP3 112 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TIMM17AQ99595 171 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 KAT8Q9H7Z6 458 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 HMG20AQ9NP66 347 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC35D1Q9NTN3 355 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 THAP1Q9NVV9 213 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SRRM2Q9UQ35 2752 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A1W2PPE3 182 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 M0R135 149 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 FFAR1O14842 300 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC16A7O60669 478 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SC5DO75845 299 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CD74P04233 296 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 H2AFB2P0C5Z0 115 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CRYGAP11844 174 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 HLA-DMAP28067 261 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CD68P34810 354 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 IER3P46695 156 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 OR3A1P47881 315 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TMBIM6P55061 237 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ELLP55199 621 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UBE2D2P62837 147 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 FOXE3Q13461 319 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 EBI3Q14213 229 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TRMT10CQ7L0Y3 403 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SSX7Q7RTT5 188 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UBE3DQ7Z6J8 389 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PRUNE1Q86TP1 453 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 OR2T4Q8NH00 348 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CMTM2Q8TAZ6 248 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 FANK1Q8TC84 345 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SCARB1Q8WTV0 552 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF799Q96GE5 643 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 Q96M66 194 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CCDC140Q96MF4 163 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 PSMB7Q99436 277 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CITED1Q99966 193 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SDCBP2Q9H190 292 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 HRH4Q9H3N8 390 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SPACA1Q9HBV2 294 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 DUSP22Q9NRW4 184 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 GLTPQ9NZD2 209 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 OR5AC2Q9NZP5 309 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 LEF1Q9UJU2 399 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RFNGQ9Y644 331 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 MCM3APO60318 1980 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SCN5AQ14524 2016 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 GREB1Q4ZG55 1949 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TRGV1A0A0A0MS02 117 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 IGHV3-49A0A0A0MS15 119 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 LOC102723971A0A1B0GUV8 181 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM14DPA8MWL7 114 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 H3BQF6 201 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 AIFM1O95831 613 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 RPLP1P05386 114 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CRYGDP07320 174 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 LINC00271P0C7V0 271 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 UBE2MP61081 183 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 NAA20P61599 178 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CSNK2BP67870 215 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 KCNJ10P78508 379 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 CDK16Q00536 496 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 FUT5Q11128 374 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 EXOSC2Q13868 293 aaKnown RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 GABRA6Q16445 453 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 C19orf54Q5BKX5 351 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC18B1Q6NT16 456 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF683Q8IZ20 524 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 STPG2Q8N412 459 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 SLC35G3Q8N808 338 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF738Q8NE65 137 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 OR13J1Q8NGT2 312 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 C17orf77Q96MU5 243 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 NOL4LQ96MY1 436 aaPredicted RBP2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 NRIP2Q9BQI9 281 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 GPR35Q9HC97 309 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 G6PC2Q9NQR9 355 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 DEPPQ9NTK1 212 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 TMEM5Q9Y2B1 443 aa2.18□□□□□ -2.06
CCDC88A-205ENST00000426576 MYOFQ9NZM1 2061 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A096LPF7 62 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 A0A1W2PNU3 283 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 NPIPB11E5RHQ5 1161 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 SDCBPO00560 298 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 WNT7AO00755 349 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 TNFRSF13BO14836 293 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 POLR3GO15318 223 aaPredicted RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 ZNF207O43670 478 aaKnown RBP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 GMDSO60547 372 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 EIF3GO75821 320 aaKnown RBP eCLIP2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 LEPP41159 167 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 HAAOP46952 286 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 MTNR1BP49286 362 aa2.17□□□□□ -2.06
CCDC88A-205ENST00000426576 UBE2AP49459 152 aa2.17□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms