RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 SSX2Q16385 188 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 AANATQ16613 207 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 C2orf76Q3KRA6 126 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 HES5Q5TA89 166 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 AWAT2Q6E213 333 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 ELP2Q6IA86 826 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 C11orf88Q6PI97 169 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 ACP7Q6ZNF0 438 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 TCF23Q7RTU1 214 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 OR4S1Q8NGB4 309 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 SLAMF9Q96A28 289 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 CEP19Q96LK0 163 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 NRIP2Q9BQI9 281 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 HES4Q9HCC6 221 aa10.36□□□□□ -0.75
LINC00339-202ENST00000416769 SMIM30A4D0T7 59 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 SH2D7A6NKC9 451 aaPredicted RBP10.35□□□□□ -0.75
LINC00339-202ENST00000416769 BPNT1O95861 308 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 CSTBP04080 98 aaKnown RBP10.35□□□□□ -0.75
LINC00339-202ENST00000416769 CALCBP10092 127 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 SLC2A2P11168 524 aaPredicted RBP10.35□□□□□ -0.75
LINC00339-202ENST00000416769 ARSBP15848 533 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 BCL3P20749 454 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 NPBWR2P48146 333 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 SCAND1P57086 179 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 DYNC1I2Q13409 638 aaKnown RBP10.35□□□□□ -0.75
LINC00339-202ENST00000416769 IDNKQ5T6J7 187 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 FAM58AQ8N1B3 248 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 KCNG3Q8TAE7 436 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 DYNC2LI1Q8TCX1 351 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 FAM3DQ96BQ1 224 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 MRPS24Q96EL2 167 aaKnown RBP10.35□□□□□ -0.75
LINC00339-202ENST00000416769 SEBOXQ9HB31 216 aaPredicted RBP10.35□□□□□ -0.75
LINC00339-202ENST00000416769 RAB18Q9NP72 206 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 ABRACLQ9P1F3 81 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 OR14J1Q9UGF5 321 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 DAPK2Q9UIK4 370 aa10.35□□□□□ -0.75
LINC00339-202ENST00000416769 VGLL3A8MV65 326 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 TMEM14DPA8MWL7 114 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 ODF3BA8MYP8 253 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 F8VVB4 439 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 F8VWA3 439 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 NXPH2O95156 264 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 HTR3BO95264 441 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 ARG1P05089 322 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 ZNF182P17025 639 aaPredicted RBP10.34□□□□□ -0.75
LINC00339-202ENST00000416769 CD24P25063 80 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 HOXD3P31249 432 aaPredicted RBP10.34□□□□□ -0.75
LINC00339-202ENST00000416769 PRDX2P32119 198 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 SOX6P35712 828 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 CLDN12P56749 244 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 QRFPP83859 136 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 P2RY14Q15391 338 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 OR2W3Q7Z3T1 314 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 OR4F17Q8NGA8 305 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 OR51D1Q8NGF3 324 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 OR51T1Q8NGJ9 327 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 PTX4Q96A99 478 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 KCTD12Q96CX2 325 aaKnown RBP10.34□□□□□ -0.75
LINC00339-202ENST00000416769 OR4F4Q96R69 305 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 OCSTAMPQ9BR26 566 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 BARHL1Q9BZE3 327 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 HEXA-AS1Q9H8Q6 139 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 HMG20AQ9NP66 347 aa10.34□□□□□ -0.75
LINC00339-202ENST00000416769 LDLRAD4O15165 306 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 GTF2F2P13984 249 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 CD33P20138 364 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 SERPINA2P20848 420 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 LGALS4P56470 323 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 SLC22A6Q4U2R8 563 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 NHLRC3Q5JS37 347 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 BAIAP2L2Q6UXY1 529 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 LIAT1Q6ZQX7 453 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 OSR2Q8N2R0 312 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 WFDC9Q8NEX5 89 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 OR10K1Q8NGX5 313 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 ACOT12Q8WYK0 555 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 EMG1Q92979 244 aaKnown RBP10.33□□□□□ -0.76
LINC00339-202ENST00000416769 CST11Q9H112 138 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 LIN7BQ9HAP6 207 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 RBFOX1Q9NWB1 397 aaKnown RBP10.33□□□□□ -0.76
LINC00339-202ENST00000416769 CCDC59Q9P031 241 aaKnown RBP10.33□□□□□ -0.76
LINC00339-202ENST00000416769 RAB22AQ9UL26 194 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 SPATA2Q9UM82 520 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 HILPDAQ9Y5L2 63 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 KIAA2026Q5HYC2 2103 aa10.33□□□□□ -0.76
LINC00339-202ENST00000416769 TMEM272A0A1B0GTI8 110 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 C17orf98A8MV24 154 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 CRTAPO75718 401 aaPredicted RBP10.32□□□□□ -0.76
LINC00339-202ENST00000416769 PRKACAP17612 351 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 RAB6AP20340 208 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 CD83Q01151 205 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 IL13RA2Q14627 380 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 ZNF146Q15072 292 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 SMIM21Q3B7S5 101 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 DEFB121Q5J5C9 76 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 SPIN3Q5JUX0 258 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 MZT2AQ6P582 158 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 TPRX1Q8N7U7 411 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 OR5AU1Q8NGC0 362 aa10.32□□□□□ -0.76
LINC00339-202ENST00000416769 AP3S1Q92572 193 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms