RNA–Protein interactions for RNA: ENST00000416728.3

PAF1-202, Transcript of PAF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 2

Gene PAF1, Length 1,383 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PAF1-202ENST00000416728 METTL9Q9H1A3 318 aa11.39□□□□□ -0.59
PAF1-202ENST00000416728 IFT22Q9H7X7 185 aa11.39□□□□□ -0.59
PAF1-202ENST00000416728 ZNF581Q9P0T4 197 aa11.39□□□□□ -0.59
PAF1-202ENST00000416728 ZMAT5Q9UDW3 170 aaKnown RBP11.39□□□□□ -0.59
PAF1-202ENST00000416728 ING4Q9UNL4 249 aa11.39□□□□□ -0.59
PAF1-202ENST00000416728 IGHV3-72A0A0B4J1Y9 119 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 IGHV1-3A0A0C4DH29 117 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 NCBP2LA6PVI3 153 aaKnown RBP11.38□□□□□ -0.59
PAF1-202ENST00000416728 AP4M1O00189 453 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 ZNF93P35789 620 aaPredicted RBP11.38□□□□□ -0.59
PAF1-202ENST00000416728 EBI3Q14213 229 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 CCDC58Q4VC31 144 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 KLHL22Q53GT1 634 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 NHLRC3Q5JS37 347 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 DDI2Q5TDH0 399 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 TEX38Q6PEX7 206 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 TGIF2LXQ8IUE1 241 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 IZUMO1Q8IYV9 350 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 OR52N1Q8NH53 320 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 ARL11Q969Q4 196 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 EAF1Q96JC9 268 aaPredicted RBP11.38□□□□□ -0.59
PAF1-202ENST00000416728 S100A13Q99584 98 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 C9orf16Q9BUW7 83 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 TMEM138Q9NPI0 162 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 MRPS18AQ9NVS2 196 aaKnown RBP11.38□□□□□ -0.59
PAF1-202ENST00000416728 PAK1IP1Q9NWT1 392 aaPredicted RBP11.38□□□□□ -0.59
PAF1-202ENST00000416728 IL36GQ9NZH8 169 aa11.38□□□□□ -0.59
PAF1-202ENST00000416728 LOC100130705A0A1B0GUX0 176 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 SDCBPO00560 298 aaPredicted RBP11.37□□□□□ -0.59
PAF1-202ENST00000416728 GEMIN2O14893 280 aaKnown RBP11.37□□□□□ -0.59
PAF1-202ENST00000416728 LIMS3P0CW19 117 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 LIMS4P0CW20 117 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 SERPINA2P20848 420 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 GPR12P47775 334 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 XAF1Q6GPH4 301 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 RPL22L1Q6P5R6 122 aaKnown RBP11.37□□□□□ -0.59
PAF1-202ENST00000416728 LINC00596Q86U02 117 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 OR52M1Q8NGK5 317 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 OR2T10Q8NGZ9 312 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 NEK7Q8TDX7 302 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 GON7Q9BXV9 100 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 ABCG5Q9H222 651 aa11.37□□□□□ -0.59
PAF1-202ENST00000416728 LIN7CQ9NUP9 197 aaKnown RBP11.37□□□□□ -0.59
PAF1-202ENST00000416728 LINC01548A6NM66 108 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 H0YHG0 523 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 C15orf65H3BRN8 121 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 ZNF780AO75290 641 aaPredicted RBP11.36□□□□□ -0.59
PAF1-202ENST00000416728 IL3RAP26951 378 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 BDKRB2P30411 391 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 GP2P55259 537 aaKnown RBP11.36□□□□□ -0.59
PAF1-202ENST00000416728 RAB25P57735 213 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 PNLIPRP3Q17RR3 467 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 MPV17LQ2QL34 196 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 ATAD3CQ5T2N8 411 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 LINC00311Q8N616 119 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 Q8N6K4 173 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 C8orf31Q8N9H6 132 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 UBALD1Q8TB05 177 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 CCDC107Q8WV48 283 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 DUX3Q96PT4 197 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 GFOD1Q9NXC2 390 aa11.36□□□□□ -0.59
PAF1-202ENST00000416728 IGHV3-43A0A0B4J1X8 118 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 AIPO00170 330 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 CCL24O00175 119 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 ORC5O43913 435 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 RPLP1P05386 114 aaKnown RBP11.35□□□□□ -0.59
PAF1-202ENST00000416728 IGHV3-43DP0DP04 118 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 GTF2F2P13984 249 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 DGCR2P98153 550 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 SLC22A6Q4U2R8 563 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 CXorf66Q5JRM2 361 aaPredicted RBP11.35□□□□□ -0.59
PAF1-202ENST00000416728 TMPRSS11AQ6ZMR5 421 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 C10orf67Q8IYJ2 551 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 STX19Q8N4C7 294 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 Q8N9W7 124 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 APH1BQ8WW43 257 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 RTN4IP1Q8WWV3 396 aaPredicted RBP11.35□□□□□ -0.59
PAF1-202ENST00000416728 RAX2Q96IS3 184 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 WWC2-AS2Q96NR7 200 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 SLC29A1Q99808 456 aa11.35□□□□□ -0.59
PAF1-202ENST00000416728 FGF20Q9NP95 211 aaPredicted RBP11.35□□□□□ -0.59
PAF1-202ENST00000416728 MOSP00540 346 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 MT-ND4P03905 459 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 DCKP27707 260 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 CD1BP29016 333 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 ETV1P50549 477 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 RIPK1Q13546 671 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 GPR50Q13585 617 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 SMN1Q16637 294 aaKnown RBP11.34□□□□□ -0.59
PAF1-202ENST00000416728 OR2G6Q5TZ20 316 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 ZNF497Q6ZNH5 498 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 TMEM104Q8NE00 496 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 OR8H1Q8NGG4 311 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 OR8U1Q8NH10 309 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 TFAP2CQ92754 450 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 ST6GALNAC6Q969X2 333 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 ORAI1Q96D31 301 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 ZNF184Q99676 751 aaPredicted RBP11.34□□□□□ -0.59
PAF1-202ENST00000416728 RASL11BQ9BPW5 248 aa11.34□□□□□ -0.59
PAF1-202ENST00000416728 DCLRE1BQ9H816 532 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms