RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 SIGLEC12Q96PQ1 595 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 HIST1H2BNQ99877 126 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 HIST1H2BMQ99879 126 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 GPR61Q9BZJ8 451 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 PRDM13Q9H4Q3 707 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 SIRT7Q9NRC8 400 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 PILRBQ9UKJ0 227 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 DMRT1Q9Y5R6 373 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 ATP23Q9Y6H3 246 aa8.4□□□□□ -1.07
CD44-206ENST00000415148 TRBV6-6A0A0A6YYG2 114 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 TRAV1-1A0A0B4J248 108 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 SLC22A20A6NK97 555 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 ZNF729A6NN14 1252 aaPredicted RBP8.39□□□□□ -1.07
CD44-206ENST00000415148 ZNF587BE7ETH6 402 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 ADAM20O43506 726 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 SSSCA1O60232 199 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 GDF9O60383 454 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 DFFBO76075 338 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 RNF224P0DH78 156 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 BCL3P20749 454 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 S100GP29377 79 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 TAGLN2P37802 199 aaKnown RBP8.39□□□□□ -1.07
CD44-206ENST00000415148 CDX1P47902 265 aaPredicted RBP8.39□□□□□ -1.07
CD44-206ENST00000415148 DUSP3P51452 185 aaPredicted RBP8.39□□□□□ -1.07
CD44-206ENST00000415148 DYNLT3P51808 116 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 P4HA3Q7Z4N8 544 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 GAPTQ8N292 157 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 TMEM217Q8N7C4 229 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 CPEB3Q8NE35 698 aaKnown RBP8.39□□□□□ -1.07
CD44-206ENST00000415148 PLK3Q9H4B4 646 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 ARHGAP21Q5T5U3 1957 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 CHD3Q12873 2000 aaKnown RBP8.39□□□□□ -1.07
CD44-206ENST00000415148 IGKV3D-15A0A087WSY6 115 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 B4DEV8 164 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 TNFSF12O43508 249 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 TRGC2P03986 189 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 SPINK2P20155 84 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 HOXA6P31267 233 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 PRDX4Q13162 271 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 KHDC3LQ587J8 217 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 AKR1C8PQ5T2L2 129 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 PLPPR1Q8TBJ4 325 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 HS3ST6Q96QI5 342 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 ATP5SQ99766 215 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 CALHM2Q9HA72 323 aa8.39□□□□□ -1.07
CD44-206ENST00000415148 TNRC6BQ9UPQ9 1833 aaKnown RBP8.38□□□□□ -1.07
CD44-206ENST00000415148 TRIOBPQ9H2D6 2365 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 A0A1B0GU03 582 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 LRP5LA4QPB2 252 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 CHST1O43916 411 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 SCAF4O95104 1147 aaKnown RBP8.38□□□□□ -1.07
CD44-206ENST00000415148 SCTP09683 121 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 TAS2R30P59541 319 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 UBE2KP61086 200 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 PMS2CLQ68D20 193 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 SLC35E3Q7Z769 313 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 DMRTC2Q8IXT2 367 aaPredicted RBP8.38□□□□□ -1.07
CD44-206ENST00000415148 OR5A2Q8NGI9 324 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 ABHD5Q8WTS1 349 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 TVP23CQ96ET8 276 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 SSX3Q99909 188 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 IER2Q9BTL4 223 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 OPA3Q9H6K4 179 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 RNF115Q9Y4L5 304 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 KIAA2026Q5HYC2 2103 aa8.38□□□□□ -1.07
CD44-206ENST00000415148 A0A1B0GV90 55 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 LRRC3CA6NJW4 275 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 TRAPPC2LH3BP13 241 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 WRBO00258 174 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 CYB5BO43169 146 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 PGLYRP1O75594 196 aaPredicted RBP8.37□□□□□ -1.07
CD44-206ENST00000415148 RFPL3SP0C7P2 107 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 CCL4P13236 92 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 PAX9P55771 341 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 GFRA1P56159 465 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 HERPUD1Q15011 391 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 C4orf17Q53FE4 359 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 WIPI1Q5MNZ9 446 aaPredicted RBP8.37□□□□□ -1.07
CD44-206ENST00000415148 ZNF429Q86V71 674 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 MYPOPQ86VE0 399 aaPredicted RBP8.37□□□□□ -1.07
CD44-206ENST00000415148 ZDHHC23Q8IYP9 409 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 CLDND2Q8NHS1 167 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 C14orf144Q96I85 54 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 RAB40CQ96S21 281 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 PRO1933Q9H354 126 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 TREM2Q9NZC2 230 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 NOSIPQ9Y314 301 aaKnown RBP8.37□□□□□ -1.07
CD44-206ENST00000415148 SIT1Q9Y3P8 196 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 A0A0G2JMM0 328 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 A0A1W2PPB8 328 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 A0A1W2PRS3 328 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 KIR3DP1A8MWS1 328 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 GATCO43716 136 aaKnown RBP8.37□□□□□ -1.07
CD44-206ENST00000415148 MRPL33O75394 65 aaKnown RBP8.37□□□□□ -1.07
CD44-206ENST00000415148 TRAPPC6AO75865 159 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 F2RP25116 425 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 RPL23AP62750 156 aaKnown RBP8.37□□□□□ -1.07
CD44-206ENST00000415148 ZNF154Q13106 437 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 GAMTQ14353 236 aa8.37□□□□□ -1.07
CD44-206ENST00000415148 IZUMO4Q1ZYL8 232 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms